SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86089

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86089
AGCTGTTTAGCTCATTCGAACACTTGCCTGAAGCGAATGGCATGGAGAATTCAAATACAGGTTTAAAGGAACCCCTGCTCATTCAAAGGAAGAGACATCCTCAAGAAGAATATGAAGAAAATGAGTACTGGGGAGACCATGCTATTGGTATTGTTTGTACAATGATTTATGGGAGCATTGCTGTGATGGGATATCTGATGTTTGGCAATGAAGTGGAATCTCAAGTAACATTGAACCTCCCAGGAACACTGGTGGCTTCGAAAGTGGCAATCTATATAACATTGATAAATCCCTTTGCAAAATTTTCTCTGACAATTACTCCTTTGGCCACGGCCTTGGAAGAGTTCCTTCCTTCATCAGGTGGCTGGCTTGTAGTATGGGGCACCGTCATCAGGACCTTGTTGGTTATAAGCACAGTAGCTGTGGCACTTGCAGTACCATTTTTTGGTATCTAATGGCTCTGATAGGTTCTTTA

Ace file of the UniGene sp_v2.0_unigene86089 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb\|AEC09638.1\| transmembrane amino acid transporter-like protein [Arabidopsis thaliana]	-	-	7.0e-24	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 56 aas, your sequence is shorter than subject: 138 - 161

Fln protein: MENSNTGLKEPLLIQRKRHPQEEYEENEYWGDHAIGIVCTMIYGSIAVMGYLMFGNEVESQVTLNLPGTLVASKVAIYITLINPFAKFSLTITPLATALEEFLPSSGGWLVVWGTVIRTLLVISTVAVALAVPFFGI*

Protein Length: 139

Fln nts: AGCTGTTTAGCTCATTCGAACACTTGCCTGAAGCGAATGGC_-_ATGGAGAATTCAAATACAGGTTTAAAGGAACCCCTGCTCATTCAAAGGAAGAGACATCCTCAAGAAGAATATGAAGAAAATGAGTACTGGGGAGACCATGCTATTGGTATTGTTTGTACAATGATTTATGGGAGCATTGCTGTGATGGGATATCTGATGTTTGGCAATGAAGTGGAATCTCAAGTAACATTGAACCTCCCAGGAACACTGGTGGCTTCGAAAGTGGCAATCTATATAACATTGATAAATCCCTTTGCAAAATTTTCTCTGACAATTACTCCTTTGGCCACGGCCTTGGAAGAGTTCCTTCCTTCATCAGGTGGCTGGCTTGTAGTATGGGGCACCGTCATCAGGACCTTGTTGGTTATAAGCACAGTAGCTGTGGCACTTGCAGTACCATTTTTTGGTATCTAATGGCTCTGATAGGTTCTTTA

Fln Alignment:

biogeco3_euler_16097___MIYGSIAVMGYLMFGNEVESQVTLNLPGTLVASKVAIYITLINPFAKFSLTITPLATALEEFLPSSGGWLVVWGTVIRTLLVISTVAVALAVPFFG
D5A864_______________MIYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSSDSWLVLWGIGIRTLLVISTVAVALALPFFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain