SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86063

Length: 483 nt

UniGene Fasta

>sp_v2.0_unigene86063
AATGTGGAAGGGTGATAAAAAGCGGGCACCGAACGTTTTTCAAGCACCTGAAGCTCTATTCGCACCAGAGCTCATAGATGTTGAAGGAGATGGTATGGCGGATATGGTGTTTCGCTGTATTCAGGAAATGGACATAGACAACCGTATGTCTCTGTACCAACATATTGTTCTTAGTGGAGGAAGTACAATGTATCCTGGTTTGCCAAGTCGCTTGGAGAGAGAAATACATGATCGCTATCTTCAGGTAGTATTGAAGGGTAACAAAGATGGACTTAAGGTTTGTTGAAGAGAAAGTTGGAAGCCCCATCACTTTTCTTGATAAGGTCATGGGCATTGTGGAGAAGCAAATTCATAGAGCCATTTTCCTTCATCTATCTTATAGATAAGGGATCAAATATATATGTCTTGTGCCCTTAATAATGATTGTCGTGTTTTCCAAACATATATAGTTGTAACTTGTTTCCAATATTTATTTTATACAAT

Ace file of the UniGene sp_v2.0_unigene86063

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin-related protein 2 n=7 Tax=rosids RepID=ARP2_ARATH	-	-	4.0e-36	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	actin related protein 2	-	-	1.37327e-43	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	1.37327e-43	93%
Blast2go	actin filament organization	GO:0007015	Biological Process	1.37327e-43	93%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	1.37327e-43	93%
Blast2go	Arp2/3 protein complex	GO:0005885	Cellular Component	1.37327e-43	93%
Blast2go	membrane	GO:0016020	Cellular Component	1.37327e-43	93%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	1.37327e-43	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 39 aas, putative chimeric sequence, your sequence is shorter than subject: 95 - 244

Fln protein: MWKGDKKRAPNVFQAPEALFAPELIDVEGDGMADMVFRCIQEMDIDNRMSLYQHIVLSGGSTMYPGLPSRLEREIHDRYLQVVLKGNKDGLKVC*

Protein Length: 96

Fln nts: AATGTGGAAGGGTGATAAAAAGCGGGCACCGAACGTTTTTCAAGCACCTGAAGCTCTATTCGCACCAGAGCTCATAGATGTTGAAGGAGATGGTATGGCGGATATGGTGTTTCGCTGTATTCAGGAAATGGACATAGACAACCGTATGTCTCTGTACCAACATATTGTTCTTAGTGGAGGAAGTACAATGTATCCTGGTTTGCCAAGTCGCTTGGAGAGAGAAATACATGATCGCTATCTTCAGGTAGTATTGAAGGGTAACAAAGATGGACTTAAGGTTTGTTGA___AGAGAAAGTTGGAAGCCCCATCACTTTTCTTGATAAGGTCATGGGCATTGTGGAGAAGCAAATTCATAGAGCCATTTTCCTTCATCTATCTTATAGATAAGGGATCAAATATATATGTCTTGTGCCCTTAATAATGATTGTCGTGTTTTCCAAACATATATAGTTGTAACTTGTTTCCAATATTTATTTTATACAAT

Fln Alignment:

biogeco3_euler_14785___FQAPEALFAPELIDVEGDGMADMVFRCIQEMDIDNRMSLYQHIVLSGGSTMYPGLPSRLEREI
A9NMN7_______________FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain