SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86041

Length: 472 nt

UniGene Fasta

>sp_v2.0_unigene86041
TAAACCTAGGGTTTCTGTCGGTATTTTGCTATCGCCGGAGTCTATCGTGGCTACTTGTTATCTGGGTTAAAAACACTTTTAATCGAGGGTTTTCCTTGCCGGCAGAGTGTCCTGTTTGTCCTGATTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAAATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAA

Ace file of the UniGene sp_v2.0_unigene86041

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CUL1 n=9 Tax=Poaceae RepID=Q5ZC88_ORYSJ	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Protein of unknown function DUF1442	IPR009902	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Distance to subject end: 639 aas, your sequence is shorter than subject: 105 - 744

Fln protein: MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHK

Protein Length: 106

Fln nts: TAAACCTAGGGTTTCTGTCGGTATTTTGCTATCGCCGGAGTCTATCGTGGCTACTTGTTATCTGGGTTAAAAACACTTTTAATCGAGGGTTTTCCTTGCCGGCAGAGTGTCCTGTTTGTCCTGATTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAA_-_ATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAA

Fln Alignment:

biogeco3_euler_14009___MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHK
B8LQB2_______________MTMSERKIIELEAGWEFMQKGITKLKNILEGNPEQQINSEEYMMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVERWGNHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain