SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86021

Length: 503 nt

UniGene Fasta

>sp_v2.0_unigene86021
AATGTTATGGGATATTCGTCGCCTTGAGCTTGCTGCACTTCTGATACAGAAAGAGCCCATTCGTGCAGCTGCCTGGGATCCAGTATATCCTCGTGTGGCTCTTTGCACAGGAAGCTCACATTTGTACATGTGGACACCCTCTGGTGCTTGTTGTACTTTTGTTCCTATGCTTCCTGAATTCAACGACGATGAAACTAATGACGAATAGTACACACAAAGCAAAAAATGTATCCAACATCACTTGTGACAAGGCCATCGTTGTCTGCGAATCTTCTTGGTCAACTGCAAATGACCTCTGTATACTTCTCCTGGTCGTTTACACTCTAGTGCTCACAACAGTGATTGTTTACTAGTTTCAGCTATGCCTTGAGTGTCTCCTACATTCTGCAACAAGTTATTTAGCCGTACCACTGTTGAAATTGTGCAAAGTTGATCCTTGGAAAGTTTATTCCAATGTTTAAGATACAACTTGCTGCAATGCCTTAGGAGTTCCAATTCACATT

Ace file of the UniGene sp_v2.0_unigene86021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	4.36762e-31	79%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase S9B, dipeptidylpeptidase IV N-terminal	IPR002469	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRP5

Fln msg: your sequence is shorter than subject: 69 - 464

Fln protein: MLWDIRRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACCTFVPMLPEFNDDETNDE*

Protein Length: 70

Fln nts: AATGTTATGGGATATTCGTCGCCTTGAGCTTGCTGCACTTCTGATACAGAAAGAGCCCATTCGTGCAGCTGCCTGGGATCCAGTATATCCTCGTGTGGCTCTTTGCACAGGAAGCTCACATTTGTACATGTGGACACCCTCTGGTGCTTGTTGTACTTTTGTTCCTATGCTTCCTGAATTCAACGACGATGAAACTAATGACGAATAG___TACACACAAAGCAAAAAATGTATCCAACATCACTTGTGACAAGGCCATCGTTGTCTGCGAATCTTCTTGGTCAACTGCAAATGACCTCTGTATACTTCTCCTGGTCGTTTACACTCTAGTGCTCACAACAGTGATTGTTTACTAGTTTCAGCTATGCCTTGAGTGTCTCCTACATTCTGCAACAAGTTATTTAGCCGTACCACTGTTGAAATTGTGCAAAGTTGATCCTTGGAAAGTTTATTCCAATGTTTAAGATACAACTTGCTGCAATGCCTTAGGAGTTCCAATTCACATT

Fln Alignment:

biogeco3_euler_13002___LWDIRRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACC--------------------------------TFVPMLPEFNDDETNDE
B8LRP5_______________IWDICRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACCVNIPLPQFVVSDLKWNPDGTSMLLKDRESFCCTFVPMLPEFNDDETDEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain