SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85993

Length: 343 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85993
TATGACTCTGCAACTGTTGCTGTAAATGCCAAAAAATTTACAAGGTCTATTTGGGTCGGCCATGGAAGATGTATTCCAGAGTAATTTTCATGAATTCATACCTGGGAGAACTCATTAGCCCTAAGGGATGGATGCCTTGGAAAGGGGATTTTGCTCTTGACACACTCTACTATGGGGAATACCAGAATTATGGACCGGGGGCTAAGGTTTCTGGAAGAGTGCCATGGTCTAATCAGATTCCTGGGCGAAATGTAGAAATGTATTCTATTGAAAGCTTCATACAGGGTGATGAGTGGCTACCAGGTACAATCAATTAATCCAAAAGCAAAGGCTGATTATTATG

Ace file of the UniGene sp_v2.0_unigene85993 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI	-	-	7.00649e-45	88%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	pectin methylesterase	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB84

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 105 - 302

Fln protein: *LCNCCCKCQKIYKVYLGRPWKMYSRVIFMNSYLGELISPKGWMPWKGDFALDTLYYGEYQNYGPGAKVSGRVPWSNQIPGRNVEMYSIESFIQGDEWLPGTIN*

Protein Length: 106

Fln nts: TATGACTCTGCAACTGTTGCTGTAAATGCCAAAAAATTTACAAGGTCTATTTGGGTCGGCCATGGAAGATGTATTCCAGAGTAATTTTCATGAATTCATACCTGGGAGAACTCATTAGCCCTAAGGGATGGATGCCTTGGAAAGGGGATTTTGCTCTTGACACACTCTACTATGGGGAATACCAGAATTATGGACCGGGGGCTAAGGTTTCTGGAAGAGTGCCATGGTCTAATCAGATTCCTGGGCGAAATGTAGAAATGTATTCTATTGAAAGCTTCATACAGGGTGATGAGTGGCTACCAGGTACAATCAATTAA___TCCAAAAGCAAAGGCTGATTATTATG

Fln Alignment:

biogeco3_euler_12275___KIYKVYLGRPWKMYSRVIFMNSYLGELISPKGWMPWKGDFALDTLYYGEYQNYGPGAKVSGRVPWSNQIPGRNVEMYSIESFIQGDEWLPGTIN
D5AB84_______________KIYKAYLGRPWKMYSRAIIINSYLGELISPEGWMPWIGDFALDTLYYGEYQNFGPGAKVSGRMPWSNQIPEINVGMYSARSFIQGDEWLPDTIN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain