SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85942

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85942
AATGTCATGATCCTAATATCCAATACTTTCCATATTTTGTGAGCCCACTTAAATACCCAAATTGCTAAGCAAAGGCATCATCTTCTCGTTTCAGGTGTGTGGAAAAATTGGCCTTTGTTTCAATCGTGGGTTTTCTTGCATGGGCATACAAGGCCATCCAGCCACCTCCTCCTCTTATCTGTGGAACCCCCAATGGCCCTCCAGTGACTGCTCCTCGTATTCGCCTTCAAGATGGAAGACATTTGGCCTATAAGGAAAGCGGAGTTCCAAAAGAGAGAGCCAAGTATAAGATCATCATGACACATGGTTTTATGGGATCCAGAAATGATTCCCCCTTTTCTGAGGAGCTACTGGAAGAGCTGAGCGTCTATGTTGACATT

Ace file of the UniGene sp_v2.0_unigene85942 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] emb\|CAB41157.1\| putative protein [Arabidopsis thaliana] gb\|AAL38758.1\| unknown protein [Arabidopsis thaliana] gb\|AEE78413.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis	-	-	2.0e-20	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	5.11858e-39	81%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWT7

Fln msg: Distance to subject end: 249 aas, atg_distance in limit (1-15): atg_distance = 3, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 104 - 376

Fln protein: AKASSSRFRCVEKLAFVSIVGFLAWAYKAIQPPPPLICGTPNGPPVTAPRIRLQDGRHLAYKESGVPKERAKYKIIMTHGFMGSRNDSPFSEELLEELSVYVDI

Protein Length: 105

Fln nts: AATGTCATGATCCTAATATCCAATACTTTCCATATTTTGTGAGCCCACTTAAATACCCAAATTGCTAAGCAAAGGCATCATCTTCTCGTTTCAGGTGTGTGGAAAAATTGGCCTTTGTTTCAATCGTGGGTTTTCTTGCATGGGCATACAAGGCCATCCAGCCACCTCCTCCTCTTATCTGTGGAACCCCCAATGGCCCTCCAGTGACTGCTCCTCGTATTCGCCTTCAAGATGGAAGACATTTGGCCTATAAGGAAAGCGGAGTTCCAAAAGAGAGAGCCAAGTATAAGATCATCATGACACATGGTTTTATGGGATCCAGAAATGATTCCCCCTTTTCTGAGGAGCTACTGGAAGAGCTGAGCGTCTATGTTGACATT

Fln Alignment:

biogeco3_euler_10597___ASSSRFRCVEKLAFVSIVGFLAWAYKAIQPPPPLICGTPNGPPVTAPRIRLQDGRHLAYKESGVPKERAKYKIIMTHGFMGSRNDS
A9NWT7_______________AASSR-GILRKLAIVSIAGFLACAYKAIQPPPSAICGSPDGPPVTAPRIRLQDGRHLAYKESGVPRERAKYKIIMTHGFTGSRNDT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain