SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85936

Length: 403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85936
AATGTCCTTCGCCCAGGAACTCTTTCTCTTCCATTTCCATTCGACGGATCACGCTGGCTTGGAAGGACACTACCACTGGCTTCTCCAGGTGGTGGTTGGGATCAGCCTGGCCACCACGCTGGTAGAGGCGGCCGTCCCTCGTAGTGCCCTCGTGGCACTTGTCCGTTCCATGTCAGTTCTCTTCCAAGGGGTCTGGTTGATCCACATGGCGTTCTGTCTCTGGATTCCTGCCCTTCTCCCCAAGGGTTGCGCGCTCACCAAGAAAAGGAACGTCGACTTTGTCAAATGCAGAAACAGCGATATGGCTGCAAGGGCGCTGGGAATTGCCAATTTCCAATTCAGCTGTGATCTCTTCCTTGTTCTGCTTGCAACTTTGGGTATTCTGTTTTATTCGTTGGTACTG

Ace file of the UniGene sp_v2.0_unigene85936 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF716 domain containing protein	-	-	6.00036e-42	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	uncharacterized protein	-	-	2.34621e-37	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-
Sma3	Protein of unknown function DUF716, TMEM45	IPR006904	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX20

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 134 - 286

Fln protein: MSFAQELFLFHFHSTDHAGLEGHYHWLLQVVVGISLATTLVEAAVPRSALVALVRSMSVLFQGVWLIHMAFCLWIPALLPKGCALTKKRNVDFVKCRNSDMAARALGIANFQFSCDLFLVLLATLGILFYSLVL

Protein Length: 135

Fln nts: AATGTCCTTCGCCCAGGAACTCTTTCTCTTCCATTTCCATTCGACGGATCACGCTGGCTTGGAAGGACACTACCACTGGCTTCTCCAGGTGGTGGTTGGGATCAGCCTGGCCACCACGCTGGTAGAGGCGGCCGTCCCTCGTAGTGCCCTCGTGGCACTTGTCCGTTCCATGTCAGTTCTCTTCCAAGGGGTCTGGTTGATCCACATGGCGTTCTGTCTCTGGATTCCTGCCCTTCTCCCCAAGGGTTGCGCGCTCACCAAGAAAAGGAACGTCGACTTTGTCAAATGCAGAAACAGCGATATGGCTGCAAGGGCGCTGGGAATTGCCAATTTCCAATTCAGCTGTGATCTCTTCCTTGTTCTGCTTGCAACTTTGGGTATTCTGTTTTATTCGTTGGTACTG

Fln Alignment:

biogeco3_euler_10384___MSFAQELFLFHFHSTDHAGLEGHYHWLLQVVVGISLATTLVEAAVPRSALVALVRSMSVLFQGVWLIHMAFCLWIPALLPKGCALTKKRNVDFVKCRNSDMAARALGIANFQFSCDLFLVLLATLGILF
A9NX20_______________MAFFAEYLLFNFHSTSHAGLEGRYHQLLVLLVGLCVMSAVLAAAFPKSFVVDLLGGITFTLQGTWFYQVAFALYGP-MMPTGCSIEDHE----IVCQSREFEIRGQLLANFQLGV-IVLSLLTMVVFLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain