SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85864

Length: 508 nt

UniGene Fasta

>sp_v2.0_unigene85864
TATACACAGGTTGGGTTGCTTGCTTGAAAAGCTGAAAAGCGAGAGTTTGAATCGAGATACAAGTGCCTATTGCGGCCTAGATTTTGAGGGACTGTGGGTATCAAGATTCTGCCTGTGGGAATACACATGGGTCAATTAGAATCTGTGTTGAATCTCGCTGATACAGAGTGGAGGGTTAGGGAGCTGAGGGACCAGTTCAAGGGAAAGAAGCTACTGTTGGGCGTGGATGACATGGATATTTTTAAAGGTATCAGCTTGAAGATTTTAGCCATGGAGCAGCTATTTAATATCCATCCTGAGTGGAGAGGAAAGGTAGTTTTGGTGCAGATTGCTAATCCTGCAAGGAGTAGGGGTAAAGATGTGGAGGATGTACAAGCTGAGACACATTCCGCGGCCAAAAGAGTCAACGCAACCTTTGGGTCCTCGGGCTATGAGCCTGTTGTATTGATAAACGGGTCTGTTCCATTCTATGAAAGAATTGCATTCTACACCATTGCAGAATGTGTTG

Ace file of the UniGene sp_v2.0_unigene85864

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Trehalose-6-phosphate synthase n=1 Tax=Ginkgo biloba RepID=Q5D6D9_GINBI	-	-	81%
FL-Next	Isoform 2 of Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6	-	-	67%
Blast2go	trehalose-phosphate synthase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%
Blast2go	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	82%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	82%
Blast2go	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	HAT dimerisation	IPR008906	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AH8-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 256 aas, your sequence is shorter than subject: 169 - 700

Fln protein: YTQVGLLA*KAEKREFESRYKCLLRPRF*GTVGIKILPVGIHMGQLESVLNLADTEWRVRELRDQFKGKKLLLGVDDMDIFKGISLKILAMEQLFNIHPEWRGKVVLVQIANPARSRGKDVEDVQAETHSAAKRVNATFGSSGYEPVVLINGSVPFYERIAFYTIAECV

Protein Length: 170

Fln nts: TATACACAGGTTGGGTTGCTTGCTTGAAAAGCTGAAAAGCGAGAGTTTGAATCGAGATACAAGTGCCTATTGCGGCCTAGATTTTGAGGGACTGTGGGTATCAAGATTCTGCCTGTGGGAATACACATGGGTCAATTAGAATCTGTGTTGAATCTCGCTGATACAGAGTGGAGGGTTAGGGAGCTGAGGGACCAGTTCAAGGGAAAGAAGCTACTGTTGGGCGTGGATGACATGGATATTTTTAAAGGTATCAGCTTGAAGATTTTAGCCATGGAGCAGCTATTTAATATCCATCCTGAGTGGAGAGGAAAGGTAGTTTTGGTGCAGATTGCTAATCCTGCAAGGAGTAGGGGTAAAGATGTGGAGGATGTACAAGCTGAGACACATTCCGCGGCCAAAAGAGTCAACGCAACCTTTGGGTCCTCGGGCTATGAGCCTGTTGTATTGATAAACGGGTCTGTTCCATTCTATGAAAGAATTGCATTCTACACCATTGCAGAATGTGTTG

Fln Alignment:

biogeco3_euler_7483___TVGIKILPVGIHMGQLESVLNLADTEWRVRELRDQF--KGKKLLLGVDDMDIFKGISLKILAMEQLFNIHPEWRGKVVLVQIANPARSRGKDVEDVQAETHSAAKRVNATFGSSGYEPVVLINGSVPFYERIAFYTIAEC
Q94AH8-2_____________TVSIKILPVGIHMGQLQSVLSLPETERKVGELIERYGRKGRTMLLGVDDMDIFKGITLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEMQAETYSTVKRINETFGRPGYDPIVLIDAPLKFYERVAYYVVAEC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain