SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85835

Length: 575 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85835
AATGTCTAAAGGAGGTTATGAGCAACTGCCCAGTGCTTGCATTGCCAGATTTGATGTAGCCATTTGTTTTGGAGTGTCATGCGTCAAGAGAGGGGATCAGCGCAGTATTGATGCAGGGAGGTCACCCTATAGCCTTTGAGAGTCGGAAGCTCCTTCCGCAGGAGAGGTTGTATTCCATATATGACAAGGAGATGCTGGCCATCATGCATGCATTGGCTAAGTACTGGCAGTGTTTGGCGGGTAACAGGTTCATGGTGAGGACTGATCACACCAGCCTCAAGTTCTTTTTGGAGCAAAAGCAGCGACAGGAGAGGCAGCAGAAGTGGATCAGCAAGATCCAAGCATATGACTTTGACATTGAGTATGTCAAGGGTAAGCACAACGTGGTAGCAGATGCCCTTTCTCGTAGACTAGCCACGTTGTCTCTTATGAGCTTGGATACAGACTGGAGGGCTCAACTCTTAGTAGCGTACTCCAAGGACAGGTTTGCATGTGAGGTTTTGGATGGGCAGGTGGCAGATGACAGGTACAGGGTGGTCGACGAGATCATCTATTACATGGACCAGATCTACATT

Ace file of the UniGene sp_v2.0_unigene85835 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	2.0e-28	40%
FL-Next	tr=Putative uncharacterized protein; Lotus japonicus.	-	-	0.0	40%
Blast2go	ac051624_3 retroelement	-	-	8.81551e-35	59%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q3C0H8

Fln msg: Distance to subject end: 438 aas, your sequence is shorter than subject: 191 - 1508

Fln protein: CLKEVMSNCPVLALPDLM*PFVLECHASREGISAVLMQGGHPIAFESRKLLPQERLYSIYDKEMLAIMHALAKYWQCLAGNRFMVRTDHTSLKFFLEQKQRQERQQKWISKIQAYDFDIEYVKGKHNVVADALSRRLATLSLMSLDTDWRAQLLVAYSKDRFACEVLDGQVADDRYRVVDEIIYYMDQIYI

Protein Length: 192

Fln nts: AATGTCTAAAGGAGGTTATGAGCAACTGCCCAGTGCTTGCATTGCCAGATTTGATGTAGCCATTTGTTTTGGAGTGTCATGCGTCAAGAGAGGGGATCAGCGCAGTATTGATGCAGGGAGGTCACCCTATAGCCTTTGAGAGTCGGAAGCTCCTTCCGCAGGAGAGGTTGTATTCCATATATGACAAGGAGATGCTGGCCATCATGCATGCATTGGCTAAGTACTGGCAGTGTTTGGCGGGTAACAGGTTCATGGTGAGGACTGATCACACCAGCCTCAAGTTCTTTTTGGAGCAAAAGCAGCGACAGGAGAGGCAGCAGAAGTGGATCAGCAAGATCCAAGCATATGACTTTGACATTGAGTATGTCAAGGGTAAGCACAACGTGGTAGCAGATGCCCTTTCTCGTAGACTAGCCACGTTGTCTCTTATGAGCTTGGATACAGACTGGAGGGCTCAACTCTTAGTAGCGTACTCCAAGGACAGGTTTGCATGTGAGGTTTTGGATGGGCAGGTGGCAGATGACAGGTACAGGGTGGTCGACGAGATCATCTATTACATGGACCAGATCTACATT

Fln Alignment:

biogeco3_euler_6315___LKEVMSNCPVLALPDLM*PFVLECHASREGISAVLMQGGHPIAFESRKLLPQERLYSIYDKEMLAIMHALAKYWQCLAGNRFMVRTDHTSLKFFLXXXXXXXXXXKWISKIQAYDFDIEYVKGKHNVVADALSR----RLATLSLMSLDTDWRAQLLVAYSKDRFACEVLDGQVADDR----YRVVDEIIYYMDQIYI
Q3C0H8_______________LKNALVQAPVLAIPDLQKPFTVETDASSTGIGAVLLQDKHPVAFISKVLSPRNRLLSVYDRELLALVHAVTKWHQYLAIQQFTILTDQQSLKFLLEQRLSTPAQYRWVTKLMGLSYVIQYKRGKENVVADALSRASHGELFQLSVSSISSELGGLLTQAYAADEALQQLISQVLAQPQLHAHYSVVDGFLFRKHRLMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain