SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85827

Length: 508 nt

UniGene Fasta

>sp_v2.0_unigene85827
AACAACGAGGTTCACCCGGACTACCACGATGAAATAGACATTGAATTTCTAGGAAATATCCAGGGAAGACCTTATACCTTACAGACCAACATTTATGTAAGATCTGGAAATGCCGGAAGAGGGAGGATTATTACAGGAAGAGAGTATCGAAGGACGAACCCTTACACTTTCCCAGCAAGGCCCATGTGGCTGTACGGATCGATCTGGGATGCATCTCCTTGGGCTACAGATAACGGGAAATACAAGGTCGACTACAATTACCAACCATTCGTCGCCCAGTACAGAGGCTTTGTCCTCGCGTAGTGCACGGAATCGAAGGCGGTCGCAAGCTCCGGGAAAAAAAGAGAGCAGTAAATAATTAAACATCTCATTACAATATTTATATGGAATAACCATGGCTGAAGGGTACTGTATATGTGGATAATTATTGCAGGTAAAAAGGTCAGAATCACCTGATTGGTCTGCGTTATGTCGGTTTTTCATAAAATAAGATGTATGCCTGCACATT

Ace file of the UniGene sp_v2.0_unigene85827

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative xyloglucan endo-transglycosylase [Oryza sativa Japonica Group] dbj\|BAH01448.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	6.0e-29	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 32-like	-	-	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN79

Fln msg: your sequence is shorter than subject: 101 - 265

Fln protein: NNEVHPDYHDEIDIEFLGNIQGRPYTLQTNIYVRSGNAGRGRIITGREYRRTNPYTFPARPMWLYGSIWDASPWATDNGKYKVDYNYQPFVAQYRGFVLA*

Protein Length: 102

Fln nts: AACAACGAGGTTCACCCGGACTACCACGATGAAATAGACATTGAATTTCTAGGAAATATCCAGGGAAGACCTTATACCTTACAGACCAACATTTATGTAAGATCTGGAAATGCCGGAAGAGGGAGGATTATTACAGGAAGAGAGTATCGAAGGACGAACCCTTACACTTTCCCAGCAAGGCCCATGTGGCTGTACGGATCGATCTGGGATGCATCTCCTTGGGCTACAGATAACGGGAAATACAAGGTCGACTACAATTACCAACCATTCGTCGCCCAGTACAGAGGCTTTGTCCTCGCGTAG___TGCACGGAATCGAAGGCGGTCGCAAGCTCCGGGAAAAAAAGAGAGCAGTAAATAATTAAACATCTCATTACAATATTTATATGGAATAACCATGGCTGAAGGGTACTGTATATGTGGATAATTATTGCAGGTAAAAAGGTCAGAATCACCTGATTGGTCTGCGTTATGTCGGTTTTTCATAAAATAAGATGTATGCCTGCACATT

Fln Alignment:

biogeco3_euler_6097___NNEVHPDYHDEIDIEFLGNIQGRPYTLQTNIYVRSGNAGRGRIITGRE------------------------------------YRRTNPYTFPARPMWLYGSIWDASPWATDNGKYKVDYNYQPFVAQYRGFVL
A9NN79_______________NNEAHRDYHDEIDIEFLGTIPGRPYTLQTNIYVRAGNAGTGRIITGREQQIHLWFDPTKDFHRYSILWTPFKIVFFVDDIPIRKYRRTNPYTFPARPMWLYGSIWDASSWATDNGKYKVDYKYQPFVAMYRSFVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain