SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85796

Length: 634 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene85796 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin response factor 4 [Solanum lycopersicum]	-	-	2.0e-35	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	auxin response factor 4	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 197 - 920

Fln protein: MYTSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELLAKDLHGVEWxxxxxQKTFQAVSGLSTLVQTPGRRRTKVHKQGSVVGRAVDLSKLDGYDQLICELERLFDMEGLLNDPKKGWQVLYTDNEDDMMLVGDDPWQEFCNIACKILIYTHDEVQKMTPSMFSDDANSSEEQPSTVEVSKSSIDNQDSSSPLMTGNQ*

Protein Length: 198

Fln nts: AATGTACACCAGCACACATGGTGGATTTTCAGTTCCTCGAAGAGCTGCAGAAGATTGCTTTCCTCCCTTGGACTATACCCAACAGCGGCCTTCACAGGAGCTTCTGGCAAAGGACTTGCATGGAGTTGAATGGxxxxxxxxxxxxxxxCAAAAGACATTCCAAGCTGTTTCAGGACTTTCCACTTTAGTTCAAACGCCAGGGCGTAGACGTACAAAAGTTCATAAACAAGGGAGTGTTGTGGGAAGAGCAGTTGATCTCTCAAAACTCGATGGTTATGATCAACTGATATGTGAATTGGAGCGCCTGTTTGACATGGAAGGTCTTCTGAATGATCCCAAGAAGGGATGGCAAGTGCTTTACACAGATAATGAAGATGACATGATGCTTGTCGGTGATGATCCTTGGCAGGAGTTTTGCAACATTGCTTGCAAAATTCTGATATATACTCATGATGAGGTTCAGAAAATGACACCCAGCATGTTTAGCGACGATGCTAACAGTTCTGAGGAACAACCATCTACCGTTGAGGTGTCCAAGTCATCAATTGACAACCAGGATTCTTCTTCACCACTGATGACAGGAAATCAATGAAGGTTCCTCATTCCTCCTGGGACATGGAAACATGCTTCAATAT

Fln Alignment:

biogeco3_euler_5264___TSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELLAKDLHGVEWKFRHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISAQQKTFQAVSGLSTLVQTPGRRRTKVHKQGSVVGRAVDLSKLDGYDQLICELERLFDMEGLLNDPKKGWQVLYTDNEDDMMLVGDDPWQEFCNIACKILIYTHDEVQKMTPSMFSDDANSS-EEQPSTVEVXXXXXXXXXXXSPLMTG
B8LRW7_______________TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRSMEQEISSYAKLRNSVQASGRSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSCFEQQPTTVEVSKCSIDGQDSSSPLGSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain