SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85793

Length: 530 nt

UniGene Fasta

>sp_v2.0_unigene85793
AACAACGCCAGTGGTCAGCTTGAATGGGAAGATTACTACTTCCACCTGCTCTGGCCTGAACACAGCAGAGACATGACCACTTGGCCTAAACATCCCCAAGAATACATCGAAGTGACAGACGCCTACGGAAGGGAGATACGGAAGCTCGTAACCAAAATCCTGAGCACGCTTTCATTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGTGAAAGTCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATAAGCGCGCTCACATTTCTTCTGCATAAATGGGTCACCGCCAAATGCATTCCCGGCGCCATCCTCGTCCACATTGGTGACCAAGTCGAGATTTTGAGCAACGGGCAATTCCAGAGCGGACTGCACAGAGGGCTGGTGAATAAAGAGAAGGTGAGGATTTCATGGGCGGTGTTCTGCGATCCCCCCAAAAATGCCCTAATCGGACCCATGAAGGAAGTGGT

Ace file of the UniGene sp_v2.0_unigene85793

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	leucoanthocyanidin deoxygenase c	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMM4

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 176 - 266

Fln protein: NNASGQLEWEDYYFHLLWPEHSRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILSTLSLDLGVEEDRMERVLGGESLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHKWVTAKCIPGAILVHIGDQVEILSNGQFQSGLHRGLVNKEKVRISWAVFCDPPKNALIGPMKEV

Protein Length: 177

Fln nts: AACAACGCCAGTGGTCAGCTTGAATGGGAAGATTACTACTTCCACCTGCTCTGGCCTGAACACAGCAGAGACATGACCACTTGGCCTAAACATCCCCAAGAATACATCGAAGTGACAGACGCCTACGGAAGGGAGATACGGAAGCTCGTAACCAAAATCCTGAGCACGCTTTCATTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGTGAAAGTCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATAAGCGCGCTCACATTTCTTCTGCATAAATGGGTCACCGCCAAATGCATTCCCGGCGCCATCCTCGTCCACATTGGTGACCAAGTCGAGATTTTGAGCAACGGGCAATTCCAGAGCGGACTGCACAGAGGGCTGGTGAATAAAGAGAAGGTGAGGATTTCATGGGCGGTGTTCTGCGATCCCCCCAAAAATGCCCTAATCGGACCCATGAAGGAAGTGGT

Fln Alignment:

biogeco3_euler_5145___NNASGQLEWEDYYFHLLWPEHSRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILSTLSLDLGVEEDRMERVLGGESLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLH------------KWVTAKCIPGAILVHIGDQVEILSNGQFQSGLHRGLVNKEKVRISWAVFCDPPKNALIGPMKEV
A9NMM4_______________NNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain