SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85787

Length: 839 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene85787 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9R824_RICCO	-	-	4.0e-37	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	auxin-induced protein	-	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV79

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 279 - 351

Fln protein: NVSLVISPFAYFLERSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQDTSSTFASATTNLIPVVTFVLATTFRLEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSRLGLDTWVLGALLLFASCLAWSGWLTFQAPVVKKYPVxxFAFFVQTYCIRVKGPVFAAVFNPVATILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAQDKSELDTDTEKNGLENDSNNNITITATEESSIDINQPLLQHDGSAEHLNHSNTQITRE*

Protein Length: 280

Fln nts: AATGTCTCATTGGTCATCAGCCCTTTTGCTTATTTTCTAGAAAGAAGTGAAAGACCTGCAATGACCTGTGCTGTCTTCTGGGAGATTTTTACGCTTGCATTTGTTGGGATCACTATGAACCAGAATTTGTACTTTGCGGGCTTGCAAGACACTTCGTCTACATTCGCTTCTGCAACTACAAACCTCATTCCTGTTGTCACATTTGTGTTGGCCACAACATTTCGATTGGAGCATGTTAATATCAGGAGTATTTATGGCCAAGCAAAAGTTGTGGGCACCCTAGTCTGTGTGGGTGGTGCAATGGTTATGACCTTATACAAGGGCCCTGTACTCCTGAAAGCTGTTAGTCGGCTAGGTCTTGACACATGGGTGCTGGGGGCCTTACTGCTGTTTGCTAGCTGTTTGGCTTGGTCTGGCTGGCTCACATTTCAGGCTCCAGTTGTGAAGAAATATCCAGTTxxxxxxTTTGCATTCTTTGTACAAACCTATTGCATCCGAGTAAAGGGACCAGTCTTTGCTGCAGTGTTCAATCCAGTCGCAACAATACTGGTTGCAATTTTGGAACTTCTCATTCTCCATGTAAAGCTTCATCTAGGAAGTTTGTTGGGAGCAATCATGATCATTGTAGGACTTTATGTTGTGTTGTGGGGCAAGGCACAGGATAAATCTGAATTGGATACAGACACAGAAAAGAATGGACTTGAAAATGATTCCAACAACAACATCACAATTACAGCAACAGAAGAGTCTAGCATCGACATTAATCAACCCCTATTACAACATGATGGCAGTGCTGAACATTTAAATCACTCAAACACACAAATTACTCGCGAGTAATTT

Fln Alignment:

biogeco3_euler_4937___SLVISPFAYFLERSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQDTSSTFASATTNLIPVVTFVLATTFRLEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSRLGLDTWVLGALLLFASCLAWSGWLTFQAPVVKKYPVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFAFFVQTYCIRVKGPVFAAVFNPVATILVAXXXXXXXXXXXXXXXXXGAIMIIVGLYVVLWGKAQDKSELDTDTEKNGLENDSNNNITITATEESSIDINQPLLQHDGSAEHLNHSNTQITRE
A9NV79_______________SLVISPFAFFLER---------------------ITINQNCYFAGLQYTSSTFASATTNLIPVVTFVMATTFRLENVNIRSIYGQAKVVGTVVCVGGAMVMTLYKGPVLLKAVIGLGLDTWELGAILLFASCFVWSGWITFQAPVVKKYPAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFAFFVQTYCIRVKGPVFAAVFNPTSTILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAKDQSNLDTSTEKNGLENGSSNNI----REDSNIDINQPLLQNEGSAEHLNLSHTQTSHE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain