SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85772

Length: 437 nt

UniGene Fasta

>sp_v2.0_unigene85772
AATGTGTTATCCCATTGCTTATCCTGTTGGGAAGGTTCTAGACTGTGTTCTTGGGCACAATGAATCTGCTCTATTCAGGAGGGCACAACTAAAAGCTCTAGTTTCAATCCATGGTCAGGAGGCAGGTAAAGGGGGAGAGCTTACACATGATGAGACGACAATTATAAGTGGAGCACTTGATCTGACTGAAAAGACTGCAGAGGAGGCTATGACCCCAATTGAATCAACTTTTTCATTAGATGCTGGATGCGGAAGATGTGAGTTTTGGAGGCTTTTGGTGGTGGATCGACGCGGGTGTTTCTACTATGCTGGTATTGTTTGCGGGGATTATGTCGGGTCTCACCCTCGGCTTGATGTCCCTTGGCCTTGTCGATCTCGAGGTCCTTCAGAGGAGCGGTACACCAACCGAGAAAAAACAGGCAGCTGCTATCTACATT

Ace file of the UniGene sp_v2.0_unigene85772

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBS and DUF21 domain-containing protein [Arabidopsis thaliana] dbj\|BAD44531.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE83399.1\| CBS and DUF21 domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-33	88%
FL-Next	Isoform 2 of DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1	-	-	0.0	88%
Blast2go	protein	-	-	4.91856e-43	96%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q67XQ0-2

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 145 - 485

Fln protein: MCYPIAYPVGKVLDCVLGHNESALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDAGCGRCEFWRLLVVDRRGCFYYAGIVCGDYVGSHPRLDVPWPCRSRGPSEERYTNREKTGSCYLH

Protein Length: 146

Fln nts: AATGTGTTATCCCATTGCTTATCCTGTTGGGAAGGTTCTAGACTGTGTTCTTGGGCACAATGAATCTGCTCTATTCAGGAGGGCACAACTAAAAGCTCTAGTTTCAATCCATGGTCAGGAGGCAGGTAAAGGGGGAGAGCTTACACATGATGAGACGACAATTATAAGTGGAGCACTTGATCTGACTGAAAAGACTGCAGAGGAGGCTATGACCCCAATTGAATCAACTTTTTCATTAGATGCTGGATGCGGAAGATGTGAGTTTTGGAGGCTTTTGGTGGTGGATCGACGCGGGTGTTTCTACTATGCTGGTATTGTTTGCGGGGATTATGTCGGGTCTCACCCTCGGCTTGATGTCCCTTGGCCTTGTCGATCTCGAGGTCCTTCAGAGGAGCGGTACACCAACCGAGAAAAAACAGGCAGCTGCTATCTACATT

Fln Alignment:

biogeco3_euler_4635___MCYPIAYPVGKVLDCVLGHNESALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD
Q67XQ0-2_____________LCYPIAFPIGKILDLVLGHND-ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain