SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85750

Length: 358 nt

UniGene Fasta

>sp_v2.0_unigene85750
TCAGTTTGTCAACATTTGGGTTTTACGTGAATATTTAGAGTATGATATGAAGATTCCAAACCCTCCAATTGAGATTGATTTTGAGCGGCTTGTGGATGATTTTGTATTCATCTGTTTCTTTGTTGGGAATGATTTCCTTCCCCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGTGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGACATT

Ace file of the UniGene sp_v2.0_unigene85750

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9RET3_RICCO	-	-	76%
FL-Next	sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	5 -3 exoribonuclease	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	89%
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	89%
Blast2go	nuclear-transcribed mRNA catabolic process, exonucleolytic	GO:0000291	Biological Process	89%
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	89%
Blast2go	gravitropism	GO:0009630	Biological Process	89%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	89%
Blast2go	response to 1-aminocyclopropane-1-carboxylic acid	GO:0009961	Biological Process	89%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	89%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ04

Fln msg: Distance to subject end: 530 aas, your sequence is shorter than subject: 119 - 947

Fln protein: QFVNIWVLREYLEYDMKIPNPPIEIDFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLLMVVYKKEFGEMGGYLTDAGEVNLTRVEHFIQSVAFYEERIFQKRARLKQAQENADDI

Protein Length: 120

Fln nts: TCAGTTTGTCAACATTTGGGTTTTACGTGAATATTTAGAGTATGATATGAAGATTCCAAACCCTCCAATTGAGATTGATTTTGAGCGGCTTGTGGATGATTTTGTATTCATCTGTTTCTTTGTTGGGAATGATTTCCTTCCCCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGTGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGACATT

Fln Alignment:

biogeco3_euler_3513___QFVNIWVLREYLEYDMKIPNPPIEIDFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLLMVVYKKEFGEMGGYLTDAGEVNLTRVEHFIQSVAFYEERIFQKRARLKQAQENADDI
Q9FQ04_______________QFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain