SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85734

Length: 433 nt

UniGene Fasta

>sp_v2.0_unigene85734
AATGTAGCGATTCGACGCCAACGGCGACGGCAAGATCTCGTCGTCGGAGCTGGGAGAAATTTTGCGCTCAATGGGCGGCCGTGTCGGGTCGCAGGAGCTGGGGCTCATGAAGGAGGCGGACGCGGACGGGGACGGGTTCATTAGCCTGGAGGAGTTCATCGATCTGAATACCAAAGGGAACGACAGGTTTTCGACCTCGACCGTAACGGCTCCATTTCTGCAGACGAGCTCTACCAGGTCCTCAAGGGCATGGGCGATGGCAGCACCCGGGAGGATTGCAAGAACATGATTACCGGCGTCGACAGGAACGGAGACGGGCTCATTAATTTCGAAGAATTCAAGACCATGATGACGTCGTCGTCGTCGGCTTCTTCTTCTAAATGATCTGTTATTTTCCTCCTGTGATTTTCATCTTCTGTAATAGTGCTACATT

Ace file of the UniGene sp_v2.0_unigene85734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polcalcin Jun o 2 n=2 Tax=Cupressaceae RepID=POLC2_JUNOX	-	-	5.0e-29	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	calcium-binding pollen allergen	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	82%
Blast2go	response to cold	GO:0009409	Biological Process	82%
Blast2go	cytoplasm	GO:0005737	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZH0

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 128 - 194

Fln protein: M*RFDANGDGKISSSELGEILRSMGGRVGSQELGLMKEADADGDGFISLEEFIDLNTKGNxxxFDLDRNGSISADELYQVLKGMGDGSTREDCKNMITGVDRNGDGLINFEEFKTMMTSSSSASSSK*

Protein Length: 129

Fln nts: AATGTAGCGATTCGACGCCAACGGCGACGGCAAGATCTCGTCGTCGGAGCTGGGAGAAATTTTGCGCTCAATGGGCGGCCGTGTCGGGTCGCAGGAGCTGGGGCTCATGAAGGAGGCGGACGCGGACGGGGACGGGTTCATTAGCCTGGAGGAGTTCATCGATCTGAATACCAAAGGGAACxxxxxxxxxTTCGACCTCGACCGTAACGGCTCCATTTCTGCAGACGAGCTCTACCAGGTCCTCAAGGGCATGGGCGATGGCAGCACCCGGGAGGATTGCAAGAACATGATTACCGGCGTCGACAGGAACGGAGACGGGCTCATTAATTTCGAAGAATTCAAGACCATGATGACGTCGTCGTCGTCGGCTTCTTCTTCTAAATGATCTGTTATTTTCCTCCTGTGATTTTCATCTTCTGTAATAGTGCTACATT

Fln Alignment:

biogeco3_euler_2944___RFDANGDGKISSSELGEILRSMGGRVGSQELGL-MKEADADGDGFISLEEFIDLNTKGNDRxxxxxxxxxxxQVFDLDRNGSISADELYQVLKGMGDGSTREDCKNMITGVDRNGDGLINFEEFKTMMT
A9NZH0_______________RFDANGDGKISSSELGDILRSMGCRVGPRELGLMMKEADADGDGFISLEEFIDLNTKGNDKxxxxxxxxxxxKVFDLDRNGSISADELYQVLKGMGDGSSREDCQNMITGVDRNGDGLINFEEFKTMMT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain