SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85675

Length: 320 nt

UniGene Fasta

>sp_v2.0_unigene85675
AAAATGGCTATGGAGTATCTGGAAAGGAGGGAATGTGAATATGATATCAAGGCCTCTGTAGATTTCTACACAGAGGAAGGAGAATCTGCAACCCCATTTTTGACAGGAGTCCTAGTATTCACATCTACTCCAAACAATGAGATAAACAAGAACTACCTGGGACCAGCTCCACAAGAAGAAATGGCAAGACAAATAGCAAAAGCTGTTGGCCCATGTGGGAGTAACCGTGACTATCTTTTCAAGTTGGAGAAAACCATGGCTGGCATTGGTCATGAAGACCAGGGATTGATCAAACTTGCAAATGAGGTCAGAAGAACATT

Ace file of the UniGene sp_v2.0_unigene85675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ChaC-like family protein [Arabidopsis thaliana] dbj\|BAC42496.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63298.1\| At5g26220 [Arabidopsis thaliana] gb\|AED93538.1\| ChaC-like family protein [Arabidopsis thaliana]	-	-	2.0e-34	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	like family protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to lead ion	GO:0010288	Biological Process	0.0	80%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	ChaC-like protein	IPR006840	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK82

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 106 - 195

Fln protein: KMAMEYLERRECEYDIKASVDFYTEEGESATPFLTGVLVFTSTPNNEINKNYLGPAPQEEMARQIAKAVGPCGSNRDYLFKLEKTMAGIGHEDQGLIKLANEVRRT

Protein Length: 107

Fln nts: AAAATGGCTATGGAGTATCTGGAAAGGAGGGAATGTGAATATGATATCAAGGCCTCTGTAGATTTCTACACAGAGGAAGGAGAATCTGCAACCCCATTTTTGACAGGAGTCCTAGTATTCACATCTACTCCAAACAATGAGATAAACAAGAACTACCTGGGACCAGCTCCACAAGAAGAAATGGCAAGACAAATAGCAAAAGCTGTTGGCCCATGTGGGAGTAACCGTGACTATCTTTTCAAGTTGGAGAAAACCATGGCTGGCATTGGTCATGAAGACCAGGGATTGATCAAACTTGCAAATGAGGTCAGAAGAACATT

Fln Alignment:

biogeco3_euler_1255___KMAMEYLERRECEYDIKASVDFYTEEGESATPFLTGVLVFTSTPNNEINKNYLGPAPQEEMARQIAKAVGPCGSNRDYLFKLEKTMAGIGHEDQGLIKLANEVRR
B8LK82_______________RLAMEYLERRECEYDLKASVDFYTEEGESATPFLTGVLVFISTPDKSINKYYLGPASLQEMARQIAKAAGPCGNNRDYLFKLEQALDSIGHAEQGVIKLANEVRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain