SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85674

Length: 574 nt

UniGene Fasta

>sp_v2.0_unigene85674
ATGCAGATGAGCCAATGCCTGGAGAGGAGCAGGAGGAAATTATTATGACTAGCAGTCAGTGCAGCCTGGTAAACATGACTTGTCCATTGACTGGGAAACCTGTGACTGAACTTGCAGATCCCGTGCGCAGCACGGAGTGCAAGCATATATATGAAAAGTCAGGCAGTTATGCATCATATCCGGATTGAATGCAAGGAAACGTGCCTGCAAATGTGCTGCTGCAGGTTGTCCAAAAATGCTCACTGCTGAAACCCTTATTTGCGATCCTCTTCTGAGGATAGAAATAGACGAATTACGTTTGCGAGGAAAGCGTTCTACACAAGTTCAAATAGTAGCTGATTGCACTGAGATTGATGAGGATTGATGGCTTAATATTGAAGATTATAGAATCCTAGTGTACATTATTCACCAAGTCCATCCAAAGCAAGCAATTTTATCAAGGCATAACATCTTTCACTCTATATATTGTAGGTATGTTTGATACCAAGGAGTAATACTCTGGAAAATATGTTTTATTTCTCACTTTGTAAGAAAATTTGCAATTTGATATTTCTACATCATAGTGTACAACATT

Ace file of the UniGene sp_v2.0_unigene85674

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit	-	-	1.0e-07	34%
FL-Next	sp=E3 SUMO-protein ligase MMS21; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	e3 sumo-protein ligase mms21-like	-	-	7.8943e-22	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of mitotic cell cycle	GO:0045931	Biological Process	7.8943e-22	88%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	7.8943e-22	88%
Blast2go	positive regulation of cytokinin mediated signaling pathway	GO:0080038	Biological Process	7.8943e-22	88%
Blast2go	positive regulation of cell proliferation	GO:0008284	Biological Process	7.8943e-22	88%
Blast2go	protein sumoylation	GO:0016925	Biological Process	7.8943e-22	88%
Blast2go	negative regulation of DNA endoreduplication	GO:0032876	Biological Process	7.8943e-22	88%
Blast2go	protein binding	GO:0005515	Molecular Function	7.8943e-22	88%
Blast2go	SUMO ligase activity	GO:0019789	Molecular Function	7.8943e-22	88%
Blast2go	nucleus	GO:0005634	Cellular Component	7.8943e-22	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, MIZ-type	IPR004181	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8GYH7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 56 aas, putative chimeric sequence, your sequence is shorter than subject: 62 - 249

Fln protein: ADEPMPGEEQEEIIMTSSQCSLVNMTCPLTGKPVTELADPVRSTECKHIYEKSGSYASYPD*

Protein Length: 63

Fln nts: ATGCAGATGAGCCAATGCCTGGAGAGGAGCAGGAGGAAATTATTATGACTAGCAGTCAGTGCAGCCTGGTAAACATGACTTGTCCATTGACTGGGAAACCTGTGACTGAACTTGCAGATCCCGTGCGCAGCACGGAGTGCAAGCATATATATGAAAAGTCAGGCAGTTATGCATCATATCCGGATTGA___ATGCAAGGAAACGTGCCTGCAAATGTGCTGCTGCAGGTTGTCCAAAAATGCTCACTGCTGAAACCCTTATTTGCGATCCTCTTCTGAGGATAGAAATAGACGAATTACGTTTGCGAGGAAAGCGTTCTACACAAGTTCAAATAGTAGCTGATTGCACTGAGATTGATGAGGATTGATGGCTTAATATTGAAGATTATAGAATCCTAGTGTACATTATTCACCAAGTCCATCCAAAGCAAGCAATTTTATCAAGGCATAACATCTTTCACTCTATATATTGTAGGTATGTTTGATACCAAGGAGTAATACTCTGGAAAATATGTTTTATTTCTCACTTTGTAAGAAAATTTGCAATTTGATATTTCTACATCATAGTGTACAACATT

Fln Alignment:

biogeco3_euler_1241___ADEPMPGEEQEEIIMTSSQCSLVNMTCPLTGKPVTELADPVRSTECKHIYEKS
Q8GYH7_______________AGEPMPGDDDEDIVMTSTQCPLLNMTCPLSGKPVTELADPVRSMDCRHVYEKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain