SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85643

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85643
GGAGGAAATCTGGGGGAGTGTTTACTCGGCCCTGGTCTAGAGCAGCTGTTGCAGGAATTGTCGGAGAGCGACGCCAGCAGAAGGGGTCCGCCCCCGGCGTCGAGAGCCTCGGTGGACGCTCTGGAGGAGGTGAAGGCCAGCGGCAAGGATGCGGCGGGGCAGTGCGCGGTGTGTAAGGATGAGTTCGAACTGGGGAAATATGCAAAGCGGATGCCCTGTAATCATATGTATCACGCCGATTGCATTCTTCCATGGCTTGCGCAGCATAATTCTTGCCCGGTATGTCGATATGAGATGCCGACAGACAATCCGGAATATGATCGGATGCACTCCCGTGGTCGAAATGAAACGCCTTCTTCAGGTAGAAGGTCACGCTTTTCTCATATCTGGCCCTTCAGAGCATCCATGACAACATCCCAG

Ace file of the UniGene sp_v2.0_unigene85643 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_974448.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_001030874.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAK76657.1\| unknown protein [Arabid	-	-	2.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	thioredoxin-related protein	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSK8

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 140 - 282

Fln protein: GGNLGECLLGPGLEQLLQELSESDASRRGPPPASRASVDALEEVKASGKDAAGQCAVCKDEFELGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDNPEYDRMHSRGRNETPSSGRRSRFSHIWPFRASMTTSQ

Protein Length: 141

Fln nts: GGAGGAAATCTGGGGGAGTGTTTACTCGGCCCTGGTCTAGAGCAGCTGTTGCAGGAATTGTCGGAGAGCGACGCCAGCAGAAGGGGTCCGCCCCCGGCGTCGAGAGCCTCGGTGGACGCTCTGGAGGAGGTGAAGGCCAGCGGCAAGGATGCGGCGGGGCAGTGCGCGGTGTGTAAGGATGAGTTCGAACTGGGGAAATATGCAAAGCGGATGCCCTGTAATCATATGTATCACGCCGATTGCATTCTTCCATGGCTTGCGCAGCATAATTCTTGCCCGGTATGTCGATATGAGATGCCGACAGACAATCCGGAATATGATCGGATGCACTCCCGTGGTCGAAATGAAACGCCTTCTTCAGGTAGAAGGTCACGCTTTTCTCATATCTGGCCCTTCAGAGCATCCATGACAACATCCCAG

Fln Alignment:

biogeco3_euler_373___SDASRRGPPPASRASVDALEEVKASGKDAAGQCAVCKDEFELGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDNPEYDRMHSRGRNETPSSGRRSRFSHIWPFRASMTTSQ
C0PSK8_______________SDPGRRGPPPASRASVDALENVKVSGKDAAAQCAVCKDEFEPGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDDPEYDRMHVRGRSDTSSSGRRSRFSHIWPFRASMTTSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain