SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85635

Length: 854 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene85635

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana] sp\|O82660.1\|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor emb\|CAA75723.1\| HCF136 protein [Arabidopsis thaliana] dbj\|BAB0982	-	-	83%
FL-Next	sp=Photosystem II stability/assembly factor HCF136, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	photosystem ii stability assembly factor hcf136	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	91%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	plastid organization	GO:0009657	Biological Process	91%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	91%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	91%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	BNR repeat	IPR002860	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Protein of unknown function DUF789	IPR008507	-	-
Sma3	Photosystem II HCF136, stability/assembly factor	IPR016705	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O82660

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 239 - 403

Fln protein: ETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNxxxxxxHNRTSARRIQNMGWRADGGLWLLVRGGGLYLSRGSGITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG*

Protein Length: 240

Fln nts: GGAAACAAAGGATGGGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAGGACTTCAATTACAGATTCAATTCCATAAGTTTTAAGGGAAAGGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTCTAAGTTCTCAACTTCCTGGGGATCTGGTTTATATCCAAGCAACTGGTGAAAAGAGTGCAGAGATGGTCACAGATGAAGGCGCTATTTATGTGACTTCAAATAAAGGATACAATTGGAAGGCTGCTGTGCAAGAAACTGTTTCTGCTACCTTAAACxxxxxxxxxxxxxxxxxxCACAACAGAACAAGTGCTCGCAGGATTCAGAACATGGGTTGGCGTGCAGATGGTGGACTGTGGCTTCTTGTACGTGGCGGTGGTCTCTACCTTAGCAGAGGCTCAGGGATCACTGAGGAGTTTGATGAAGTACCAATTTCAAGTAGGGGTTTTGGCATTCTTGATGTTGGGTATCGTTCAAAGGATGAAGCTTGGGCAGCTGGAGGCAGTGGCATTTTGCTGAGGACAGTAAATGGTGGAAAAACATGGATCCGTGACAAGGCTGCAGATAATATTGCAGCTAATCTTTATGCTGTGAAGTTTATTGATGAAAAGAAGGGCTTCGTGTTGGGAAATGATGGGATTCTTCTTCGGTATTTGGGATGATTAACTATATATTCATCTTAGATTATAATTCTTTGGAGGAAGAAGATTTTTTAGCTTTGTCGGCATGTATAAGTCACTGTAATCAATGGCATGCAATGGAGGACTCAGTTTTGTAGTACCGATGACTTTCTTACATT

Fln Alignment:

biogeco3_euler_217___ETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRHIGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYWQPHNRTSARRIQNMGWRADXXXXXXXXXXXXXXXXXXXITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG
O82660_______________ETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain