SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85626

Length: 540 nt

UniGene Fasta

>sp_v2.0_unigene85626
TCTGCAGCTCATCGTCAAGATGATGGGGGGTGAGGTCAAGCCTGCCGAATCCCAGGAGTACGGGAGAATGGAGGTCCGCATGCACGAGGGGTCGAAGCTCTATGGGGACATCTTCGTCGGAGGGACGCAGAATGTGTGGATGAGCCATGGGGACGAGGTCGTCAGATTGCCCGAGGGCTTCGTGGTCGTGGCCACAAGTCTGCAGAATGCCATAGCCGCCATTGAAAATCCCCACAAGGGATTATACGGCTTTCAGTACCATCCGGAGGTGACCCATTCAGTGCTTGGAATGGAGACGCTACGCCATTTTCTTTTCAGTGTTTGTGGCATCAAAGCTGATTGGAAACTTGAGGATGTGCTAGAAGAGCAAATTCAAACAGTGAGAGGAATGGTTGGACCAGTGGATCATGCCATCTGTGCATTGTCAGGTGGTGTGGACAACGGACTTTTGAGGTACAAGGAGAGAGAGCGTGTAATGGCCACATTTAAAAGTGATCTACATTTGCCTGTGACTTGTATTGATGCAACAGAACGTTTTCT

Ace file of the UniGene sp_v2.0_unigene85626

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative GMP synthase [Chenopodium rubrum]	-	-	57%
FL-Next	tr=Os08g0326600 protein; Oryza sativa subsp. japonica (Rice).	-	-	61%
Blast2go	gmp synthase	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3		IPR000991	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3		IPR006220	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3		IPR011702	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3		IPR018318	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8H4X9

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 179 - 544

Fln protein: LQLIVKMMGGEVKPAESQEYGRMEVRMHEGSKLYGDIFVGGTQNVWMSHGDEVVRLPEGFVVVATSLQNAIAAIENPHKGLYGFQYHPEVTHSVLGMETLRHFLFSVCGIKADWKLEDVLEEQIQTVRGMVGPVDHAICALSGGVDNGLLRYKERERVMATFKSDLHLPVTCIDATERF

Protein Length: 180

Fln nts: TCTGCAGCTCATCGTCAAGATGATGGGGGGTGAGGTCAAGCCTGCCGAATCCCAGGAGTACGGGAGAATGGAGGTCCGCATGCACGAGGGGTCGAAGCTCTATGGGGACATCTTCGTCGGAGGGACGCAGAATGTGTGGATGAGCCATGGGGACGAGGTCGTCAGATTGCCCGAGGGCTTCGTGGTCGTGGCCACAAGTCTGCAGAATGCCATAGCCGCCATTGAAAATCCCCACAAGGGATTATACGGCTTTCAGTACCATCCGGAGGTGACCCATTCAGTGCTTGGAATGGAGACGCTACGCCATTTTCTTTTCAGTGTTTGTGGCATCAAAGCTGATTGGAAACTTGAGGATGTGCTAGAAGAGCAAATTCAAACAGTGAGAGGAATGGTTGGACCAGTGGATCATGCCATCTGTGCATTGTCAGGTGGTGTGGACAACGGACTTTTGAGGTACAAGGAGAGAGAGCGTGTAATGGCCACATTTAAAAGTGATCTACATTTGCCTGTGACTTGTATTGATGCAACAGAACGTTTTCT

Fln Alignment:

biogeco3_euler_16___LQLIVKMMGGEVKPAESQEYGRMEVRMH-EGSKLYGDIFVGGTQNVWMSHGDEVVRLPEGFVVVATSLQNAIAAIENPHKGLYGFQYHPEVTHSVLGMETLRHFLFSVCGIKADWKLEDVLEEQIQTVRGMVGPVDHAICALSGG----------------------VDNGLLRYKERERVMATFKSDLHLPVTCIDATERF
Q8H4X9_______________MQLLVQSLGGAVEAGEKQEYGKMEVEVTARSSALYGEGEVGKRQTVWMSHGDEVVRLPEGFEVVARSVQGAVAAVENREKRFYGLQYHPEVTHSPQGMETLRRFLFDVCGIKADWKMQDVLDEEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYNERERVMLTFESDLHLPVTCVDASEQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain