SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85555

Length: 354 nt

UniGene Fasta

>sp_v2.0_unigene85555
TTCAATTCATACAGGTTCAATGGAAGAACAAGGTTGGTCTCAAATAGATTTTTCTGAGGTGAAAGCTCTGGCTTTGTTCTTTGATGGAAGTCAATACTGTCTTCCAACATTTTTACATAGGACGCCAAAACTGAAAGTCCTTATAGTATACAATTACAGTTCCATGCGTGCAAATATTATTGGGCTGCCAAGATTTTCTTCACCTATTCAAATTAGGTCCGTGTTTCTTCATAAGTTGATTATTCCTGTTTCTCTGTACGAGAATTGTAGATCCTGGGAGAGGTTGGAGAAGTTGTCCGTGTGCTTATGTGAGGGCCTTGGGAATAGCACTCTAGTGGATATGGAACTCGACCC

Ace file of the UniGene sp_v2.0_unigene85555

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I8_PINTA	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	nbs-lrr resistance protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT41

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 117 - 852

Fln protein: SIHTGSMEEQGWSQIDFSEVKALALFFDGSQYCLPTFLHRTPKLKVLIVYNYSSMRANIIGLPRFSSPIQIRSVFLHKLIIPVSLYENCRSWERLEKLSVCLCEGLGNSTLVDMELD

Protein Length: 118

Fln nts: TTCAATTCATACAGGTTCAATGGAAGAACAAGGTTGGTCTCAAATAGATTTTTCTGAGGTGAAAGCTCTGGCTTTGTTCTTTGATGGAAGTCAATACTGTCTTCCAACATTTTTACATAGGACGCCAAAACTGAAAGTCCTTATAGTATACAATTACAGTTCCATGCGTGCAAATATTATTGGGCTGCCAAGATTTTCTTCACCTATTCAAATTAGGTCCGTGTTTCTTCATAAGTTGATTATTCCTGTTTCTCTGTACGAGAATTGTAGATCCTGGGAGAGGTTGGAGAAGTTGTCCGTGTGCTTATGTGAGGGCCTTGGGAATAGCACTCTAGTGGATATGGAACTCGACCC

Fln Alignment:

biogeco2_euler_8119___SIHTGSMEEQGWSQIDFSEVKALALFFDGSQYCLPTFLHRTPKLKVLIVYNYSSMRANIIGLPRFSSPIQIRSVFLHKLIIPVSLYENCRSWERLEKLSVCLCEGLGNSTLVDME
C0PT41_______________SINTGEMEEQDWCQIDFPEVEALTLFFAASQYCLPTFLQSMPKLKVIIIYNYGSKRAILSGLPSFPSPVQIRSVFLNKLIVPPPLYKNCRSWERLEKLSVCLCEGLGNITLLDKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain