SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85545

Length: 379 nt

UniGene Fasta

>sp_v2.0_unigene85545
TTTTTCATAGAAACTTCAGCATTAAATGCGACAAATGTGAATGATGCCTTTCAGATTGTAATCAAGGAGGTTTACAATAACATGAGTCGTAAAGCCTTAAACTCAGGTTCTTACAAATCTAAATTGCTATCAAACGGAAGCACTAGTGTCAGCCTTGTGCAGAATGGGGATGCTGCAACAAAGACAGGGTTAAAAAATTGTAATAAAAATGGAAGCATCTTGGATGTATTGTGTTGACAGTCAAGCTTGTAGGGTCCTCTGTTTTTGATCTGCATGTGGCTAGAAAGCTATTGTGGAGAGGAATCGGAGGTTTTGTTTGTCTATTTGTGGAGGATCTATGACATTTGCTGGATCCTAATGCTCTATGTATTCATCAGTG

Ace file of the UniGene sp_v2.0_unigene85545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTPase [Glycine max]	-	-	7.0e-11	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	ras-related protein ara-4	-	-	2.03858e-30	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to heat	GO:0009408	Biological Process	2.03858e-30	77%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	2.03858e-30	77%
Blast2go	inter-Golgi cisterna vesicle-mediated transport	GO:0048219	Biological Process	2.03858e-30	77%
Blast2go	GTPase activity	GO:0003924	Molecular Function	2.03858e-30	77%
Blast2go	GTP binding	GO:0005525	Molecular Function	2.03858e-30	77%
Blast2go	Golgi stack	GO:0005795	Cellular Component	2.03858e-30	77%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	2.03858e-30	77%
Blast2go	Golgi-associated vesicle	GO:0005798	Cellular Component	2.03858e-30	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.03858e-30	77%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPI9

Fln msg: your sequence is shorter than subject: 79 - 217

Fln protein: FFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSGSYKSKLLSNGSTSVSLVQNGDAATKTGLKNCNKNGSILDVLC*

Protein Length: 80

Fln nts: TTTTTCATAGAAACTTCAGCATTAAATGCGACAAATGTGAATGATGCCTTTCAGATTGTAATCAAGGAGGTTTACAATAACATGAGTCGTAAAGCCTTAAACTCAGGTTCTTACAAATCTAAATTGCTATCAAACGGAAGCACTAGTGTCAGCCTTGTGCAGAATGGGGATGCTGCAACAAAGACAGGGTTAAAAAATTGTAATAAAAATGGAAGCATCTTGGATGTATTGTGTTGA___CAGTCAAGCTTGTAGGGTCCTCTGTTTTTGATCTGCATGTGGCTAGAAAGCTATTGTGGAGAGGAATCGGAGGTTTTGTTTGTCTATTTGTGGAGGATCTATGACATTTGCTGGATCCTAATGCTCTATGTATTCATCAGTG

Fln Alignment:

biogeco2_euler_7756___FFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSGSYKSKLLSNGSTSVSLVQNGDAATKTGLK
B8LPI9_______________FFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSDSYKPKLLSNRSTKVSLVPNGDAATKTGLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain