SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85411

Length: 1016 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene85411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide, putative [Oryza sativa Japonica Group] gb\|EAZ26719.1\| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	pentatricopeptide repeat-containing protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Separated hits, possible frame ERROR between 412 and 624, your sequence is longer than subject: 303 - 246

Fln protein: MIAGLSYSGLADEAIQLFGQMKEAGVRPNGNTFLGVLSACNRLGLVDEGQRYYESMDKDYGLLYSMQHYVCMVDLLGRAGRLEEAEQFIGKIPTKPSAMVWETLRNACKSHGNEDMEKRAAEKITELEPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW*

Protein Length: 304

Fln nts: AGATTGTTCTTCATGGAATTAT_-_ATGATTGCCGGGTTGTCATACAGTGGCCTTGCAGATGAGGCGATTCAGTTGTTTGGGCAGATGAAAGAGGCAGGTGTGAGACCGAATGGAAACACTTTCCTCGGGGTGCTTTCGGCGTGCAATCGGTTGGGACTGGTGGATGAAGGCCAGAGGTACTATGAATCGATGGATAAAGACTACGGACTCCTTTATTCCATGCAGCACTATGTGTGCATGGTTGATCTTCTGGGTCGAGCCGGGCGGTTGGAGGAAGCAGAGCAGTTCATCGGTAAGATACCAACAAAGCCAAGTGCTATGGTTTGGGAGACACTGCGCAACGCCTGCAAGAGTCACGGGAATGAAGATATGGAGAAACGGGCTGCGGAGAAGATCACCGAGTTGGAGCCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTAGCTGGCCAGATGAAGGAAGCAGGATATGTACCTGACACAAAGTACGTCTTGCATGATGTGGACGAGGCACAGAAAGAAATAGCTCTGATGCATCACAGTGAGAGGCTGGCCATAGCTTACGGGCTTATCAGCACTCCACCCGGCACAACACTGAGGATAATTAAAAACCTTCGAGTGTGTGGTGATTGCCACAACGCTATCAAGATCATGTCCAAGATTGTTCAGCGAGAACTTATTGTACGAGATGCAAAGCGATTTCATCATTTTAAGGATGGCAAGTGCTCCTGTGGAGATTATTGGTGA___TGCTGATTTACTTCTGCCTGGAAGGAACTTTGGAGTAGTCAGTTGTGCATCTCAATGTGTTAAGATCTCTATGTGTACCAGTTCATC

Fln Alignment:

biogeco2_euler_2722___MDKDYGLLYSMQHYVCMVDLLGRAGRLEEAEQFIGKIPTKPSAMVWETLRNACKSHGNEDMEKRAAEKITELEPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW
D5AAE0_______________MCRDYCIAPREVHYACMIDLLGRAGRLDEARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain