SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85307

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85307
TTATGGGGAATCTCTCAAATTTATGCACAGAGGTTTTAAGGTTTAAGAGGGTTTAAAAATGGAGAAGTTCAACTCTTTCGGAGAGCGAATCATGGTGGAGGGCCGAGGTGGGTCGAAAGATGAGCGCTGGAATGAGCAGCGTGACTGGCAAAATGAAGGGGCTTTTACAAGTGCAGACACAGGCCGACAAGATCGTGGAGGAGGCTACTTCTCAGAACTTCCAAGAGCCCGACTGGGCTGCCAATCTCAGGATCTGTGATATGCTCTCATTCTCCTCGAGACTTGTGCCATGAATTGCGATAAGGTGTTCTCCGAGGTGGCTTCCGAGAGAGTTTTGGATGAGATGGTCAAAATGATTGACGATCCTCACACCATTGCCGGTAATCGAAACAAGATTTTGCAATTAATTCAGGCATGGGGAGAGTCTGGCGAAGATCTTCGTTATTTGCCCGTTTTCGAGGAGACATATAAGAGATTG

Ace file of the UniGene sp_v2.0_unigene85307 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa Japonica Group] gb\|AAP55166.1\| VHS domain-containing protein, putative, expressed [Oryza sativa Japonica Group] emb\|CAD44616.1\| TOM2 protein [Oryza sativa Japonica Gro	-	-	3.0e-39	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	tom1-like protein 2-like	-	-	4.2039e-45	83%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 229 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 120 - 405

Fln protein: MSAGMSSVTGKMKGLLQVQTQADKIVEEATSQNFQEPDWAANLRICDxxxxLLETCAMNCDKVFSEVASERVLDEMVKMIDDPHTIAGNRNKILQLIQAWGESGEDLRYLPVFEETYKRL

Protein Length: 121

Fln nts: TTATGGGGAATCTCTCAAATTTATGCACAGAGGTTTTAAGGTTTAAGAGGGTTTAAAAATGGAGAAGTTCAACTCTTTCGGAGAGCGAATCATGGTGGAGGGCCGAGGTGGGTCGAAAG_-_ATGAGCGCTGGAATGAGCAGCGTGACTGGCAAAATGAAGGGGCTTTTACAAGTGCAGACACAGGCCGACAAGATCGTGGAGGAGGCTACTTCTCAGAACTTCCAAGAGCCCGACTGGGCTGCCAATCTCAGGATCTGTGATxxxxxxxxxxxxCTCCTCGAGACTTGTGCCATGAATTGCGATAAGGTGTTCTCCGAGGTGGCTTCCGAGAGAGTTTTGGATGAGATGGTCAAAATGATTGACGATCCTCACACCATTGCCGGTAATCGAAACAAGATTTTGCAATTAATTCAGGCATGGGGAGAGTCTGGCGAAGATCTTCGTTATTTGCCCGTTTTCGAGGAGACATATAAGAGATTG

Fln Alignment:

biogeco2_euler_455___AEVGRKMSAGMSSVTGKMKGLLQVQTQADKIVEEATSQNFQEPDWAANLRICDMLSxxxxxxxxxxxxxxxxxxxxxxxxxxxALILLETCAMNCDKVFSEVASERVLDEMVKMIDDPHTIAGNRNKILQLIQAWGESGEDLRYLPVFEETYKRL
A9NUS0_______________AEVSRKMSAGMSSMSDKMKELFQVQTQADKIVEEATSENLEEPDWALNLEICDMVNxxxxxxxxxxxxxxxxxxxxxxxxxxxSLVLLETCVKNCEKVFSEIAAERVLDEMVKMIDDPQTIVNNREKALILIESWGESSEELRYLPVFEETYKSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain