SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85301

Length: 243 nt

UniGene Fasta

>sp_v2.0_unigene85301
AAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAA

Ace file of the UniGene sp_v2.0_unigene85301

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sucrose phosphate synthase (Fragment) n=1 Tax=Musa acuminata AAA Group RepID=F2XG54_MUSAC	-	-	2.0e-09	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	sucrose-phosphate synthase	-	-	2.29638e-11	85%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 430 aas, your sequence is shorter than subject: 51 - 713

Fln protein: KPAIQMEIQGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDIQWVY*

Protein Length: 52

Fln nts: AAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAA

Fln Alignment:

biogeco2_euler_369___QGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDI
B8LLM0_______________KGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain