SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85290

Length: 838 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene85290 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase (Fragment) n=2 Tax=Picea RepID=A5X524_PICAB	-	-	89%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	pectinesterase family protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRK3

Fln msg: Overlapping hits, possible frame ERROR between 481 and 478, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 30 aas, your sequence is shorter than subject: 279 - 344

Fln protein: WGSSVTILSILPDLYQCLGAHPLTSIFQFTFYYNFHVTAYLFSC*VGSNMEKVLVPLGKPYITFQGAGMERTVIEWHNKANDVGADGQELHTYNTASVTVLANHFTAKNISFRNSAPAPLPGVGGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRxxxKECFVQGSIDFIFGNGRSIYYKCELNSIARVFGAIAAQGRTTPNEQTGFSFVHCRVTDTGPLYLGRAMGQYSRIVYAYSYFDDIIAGWDDWDQTSKEGTVFFGLYNCYGPGARAARRT

Protein Length: 280

Fln nts: ATGGGGAAGTAGTGTAACTATTCTCTCTATATTACCAGATCTGTATCAGTGTCTGGGTGCTCACCCTCTTACCTCTATTTTCCAGTTTACTTTCTATTACAACTTTCATGTAACTGCCTACTTGTTTAGCTGTTAAGTGGGATCCAATATGGAGAAGGTGCTTGTGCCTCTAGGGAAGCCATATATCACATTCCAAGGCGCAGGAATGGAACGCACAGTTATTGAATGGCACAATAAAGCCAACGATGTCGGCGCAGACGGGCAGGAGCTTCACACTTACAACACGGCCTCTGTCACGGTGTTGGCCAACCATTTTACCGCCAAGAACATCAGCTTCAGGAACTCAGCACCGGCCCCTCTGCCAGGGGTGGGAGGGTGGCAGGCGGTATCCTTCCGCATATCAGGCGACAAAGCATATTTCCTAGGCTGCGGCTTCTACGGAGCTCAGGACACGCTCTGCGACGACGCCGGCCGCxxxxxxxxxAAGGAATGCTTCGTCCAGGGATCCATCGACTTCATTTTCGGCAATGGACGATCTATCTATTACAAATGTGAGCTGAATTCCATAGCTCGAGTGTTTGGTGCCATAGCCGCTCAAGGCCGGACTACGCCGAACGAGCAGACAGGCTTTTCCTTCGTGCACTGTAGAGTGACTGACACAGGACCACTTTACCTGGGCCGCGCCATGGGACAATACTCGCGTATTGTCTATGCTTATTCCTACTTCGACGACATAATTGCAGGGTGGGACGACTGGGATCAAACCAGTAAAGAAGGAACCGTGTTCTTCGGTCTGTATAATTGTTATGGCCCAGGAGCTCGAGCTGCGCGTCGGACTT

Fln Alignment:

biogeco2_euler_159___GSNMEKVLVPLGKPYITFQGAGMERTVIEWHNKANDVGADGQELHTYNTASVTVLANHFTAKNISFRNSAPAPLPGVGGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRHxFKECFVQGSIDFIFGNGRSIYYKCELNSIARVFGAIAAQGRTTPNEQTGFSFVHCRVTDTGPLYLGRAMGQYSRIVYAYSYFDDIIAGWDDWDQTSKEGTVFFGLYNCYGPGARAARR
B8LRK3_______________GFYQEKVLVPQAKPYIIFQGAGMGRTVIEWHNKASDVGADGQELHTYNTASVTVLANHFTAKNISFKNSAPAPLPGMEGWQAASFRISGDKAYFLGCGFYGAQDTLCDDAGRHxFKECFIQGSIDFIFGNARSIYYKCELHSIARVFGAIAAQARTMPNEDTGFSFLHCKVTGTGPLYLGRAMGQYSRIVYAYSYFDDIIAGWDDWAQTSKDGTVFFGLYNCYGPGARAAQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain