SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85075

Length: 1224 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene85075 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SMH3_VITVI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	proline-rich receptor-like protein kinase perk8-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: your sequence is shorter than subject: 336 - 656

Fln protein: WGAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVGNCLVGPFHCILLMPCNNVGVLLFVFM*VVRALESNAAIGDLNNGVKPGESVMYNSAQYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEAKQTRHWKSELAMSCACGGESPSSVESETRPINRSHIYRDEMNEEKSSGEAPIPINCKSLTGR*

Protein Length: 337

Fln nts: ATGGGGAGCAGCTCGTGGAATAGCATATCTACATGAAGATTGTCATCCTAGAATAATTCACAGGGATATCAAGGGATCGAACATTCTATTGGACGACAGATTTGAAGCACAGGTGTCAGATTTTGGACTTGCAAAACTAGCATCAGATACCAATACGCATGTGACAACCCGTGTCATGGGAACCTTTGGGTATATGGCACCGGAATATGCATCAAGTGGAAAGCTCACTGTCAGGTCTGATGTATTCTCATTTGGGGTTGTGTTATTGGAGCTTGTGACTGGGCGGAAGCCTGTTGATGTGTCACAGCCTCTTGGTGATGAGAGCTTGGTTGAATGGGCTCGACCTTTACTTAACCGTGCCCTTGAAGAGGGGAACTTTGAAGAATTAGCTGATCCAAGGCTTGAGAAAAACTTTGATGAGGGTGAAATGTTTCGGATGGTTGAAGCTGCAGCAGCATGTGTACGTCACTCAGCTCGTAGAAGGCCAGGGATGGGGCAGGTAGGTAATTGTTTGGTTGGTCCATTTCATTGCATACTTCTCATGCCTTGCAATAATGTTGGTGTGCTGCTGTTTGTCTTTATGTAGGTGGTAAGGGCATTGGAAAGTAATGCTGCAATTGGAGATCTGAACAATGGAGTCAAACCTGGTGAGAGTGTAATGTATAATTCTGCACAGTACTCTGCAGATATCAGGAGATTTCAGAGGATGGCATTTGGCAGCCATGACAATGCTAGTGATTTCAGTGAAGTCACTAGTGAAAACGACATGAATCTCTCTGCATATAGCAATGAGTTTCGCAGGAGCAAGGAATTAGAAGCTAAACAAACCAGGCACTGGAAATCAGAGTTAGCCATGTCATGTGCTTGTGGTGGTGAGTCCCCAAGCAGTGTTGAATCAGAGACACGTCCAATAAACAGGTCACATATTTACAGGGATGAAATGAATGAGGAGAAAAGTTCTGGTGAGGCTCCAATTCCAATCAATTGTAAATCTCTTACAGGACGTTAG___CTAACCTCTGAGAGAAATTTCTGCCCCAAATGAAAGAATGTATGGGCGGCTTCTATCAATGTCGGATCAGTAGGCCCACTCTACCTGAATTACTCACACGAGGTTGTCAAACAATTGGATTCTCTGAAGTTGGGCAGGCGACTAAATCCAATGAAGGAAGCTCTGAGCCTTGACAAGTTCTTGGTGGTATGAATGTTTGAAAATGGAAGTGTGAA

Fln Alignment:

biogeco1_euler_18311___GAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVGNCLVGPFHCILLMPCNNXXXXXXXXXXXVRALESNAAIGDLNNGVKPGESVMYNSA--------QYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEA
C0PRI9_______________GAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVDTTPSFAEDSLVDWARPLLARAMEDGNLDALVDPRIQNNYNLNEMMRVVACAASSVRHSARRRPRMGQI-----------------------------VRVLEGDVSLDDLNEGVRPGHSTHYGSVGSSDYDTNQYSEDMKKFRKMALGSQEHGSEYSDPTSEYGLNQSVSSSEYLQSKEVES

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain