SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85052

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85052
ATTCAATCTCATACTGTCCAGGGATATGTTGGAAACAAAGCTGCTGTATTTCCATTGCAGCTTCTGGGTTTTGATGTGGACCCAATTAATTCAGTACAATTATCAAATAACACAGGATACCCGACGTTCCGAGGACAAGTGTTGAATGGGGAGGAGCTGTGGAGTTTAATAGAAGGCCTTGAAGCAAATGACTTACTGGTCTATACACATCTATTAACAGGGTACATTGGTTCAGTTTCTTTCTTGGAGACAATTTTACGTGTTGTTGAGAAGTTGCGTTCTGTGAATCC

Ace file of the UniGene sp_v2.0_unigene85052 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyridoxal kinase n=1 Tax=Solanum tuberosum RepID=Q4JR84_SOLTU	-	-	3.99931e-42	86%
FL-Next	sp=Pyridoxal kinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%
Blast2go	pyridoxal kinase	-	-	0.0	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxal kinase.	EC:2.7.1.35	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	92%
Blast2go	Metabolic pathways	01100		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	trichoblast differentiation	GO:0010054	Biological Process	92%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	92%
Blast2go	pyridoxal 5'-phosphate salvage	GO:0009443	Biological Process	92%
Blast2go	pyridoxal kinase activity	GO:0008478	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase	IPR004625	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Phosphomethylpyrimidine kinase type-1	IPR013749	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W1X2

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 96 - 309

Fln protein: IQSHTVQGYVGNKAAVFPLQLLGFDVDPINSVQLSNNTGYPTFRGQVLNGEELWSLIEGLEANDLLVYTHLLTGYIGSVSFLETILRVVEKLRSVN

Protein Length: 97

Fln nts: ATTCAATCTCATACTGTCCAGGGATATGTTGGAAACAAAGCTGCTGTATTTCCATTGCAGCTTCTGGGTTTTGATGTGGACCCAATTAATTCAGTACAATTATCAAATAACACAGGATACCCGACGTTCCGAGGACAAGTGTTGAATGGGGAGGAGCTGTGGAGTTTAATAGAAGGCCTTGAAGCAAATGACTTACTGGTCTATACACATCTATTAACAGGGTACATTGGTTCAGTTTCTTTCTTGGAGACAATTTTACGTGTTGTTGAGAAGTTGCGTTCTGTGAATCC

Fln Alignment:

biogeco1_euler_17498___IQSHTVQGYVGNKAAVFPLQLLGFDVDPINSVQLSNNTGYPTFRGQVLNGEELWSLIEGLEANDLLVYTHLLTGYIGSVSFLETILRVVEKLRSVN
Q8W1X2_______________IQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANDLLFYTHVLTGYIGSVSFLDTILEVINKLRSVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain