SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84907

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene84907

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8S7A6_SELML	-	-	85%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	protein	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	0.0	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O24454

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 329 - 371

Fln protein: MVMGTTGSRLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSRTKTGRETEENLLTCLADLFTQIYSQKKKTGVIAPKRFVQRVKKENENFRSYMHQDAHEFLNFLLNELVDILEKEASANQKLSGSLTQPEKKMNGSINGLANGSQQPPVLTWVHKIFQGTLTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTYMLNADDKFFCDKCCSLQEAQKRMKIKIPPRILVIHLKRFKYIEQLGRYKKLSYRVVFPMELKLCNTTDDAPGSDSEYSLFAVVVHVGSGPNHGHYISLVKSHNHWLF

Protein Length: 330

Fln nts: AGTTAGTATAATTTCTTGACAATCATGTAATTCGTGGGCTTAAAGATCCGATCTTTGAAGTCCTGACAAAACCCCAACAATCAGAGCGCGAGAGCGAGAGCGAGCAT_-_ATGGTCATGGGAACCACCGGCTCAAGACTGGAAAAGGCACTGGGAGATCAGTTTCCGGAGGGCGAGCGCTACTTTGGCCTTGAAAATTTCGGTAACACCTGCTATTGCAATAGTGTCCTTCAGGCTCTTTATTTCTGTGTTCCTTTTAGAGAGCAGTTGCTGGATTATTATAGTCGTACAAAGACTGGGAGAGAAACAGAAGAGAATCTGCTCACATGCTTGGCTGACCTCTTTACTCAGATTTACTCACAGAAGAAGAAAACTGGCGTTATTGCTCCAAAACGCTTTGTGCAACGAGTGAAAAAGGAAAATGAAAATTTCCGCAGTTATATGCACCAGGATGCACATGAGTTCTTGAATTTCCTGTTGAATGAGCTTGTTGATATTTTAGAGAAAGAAGCTAGTGCAAACCAAAAACTGTCAGGAAGTTTAACACAGCCAGAGAAGAAAATGAATGGTTCAATCAATGGCCTAGCAAATGGTTCCCAGCAGCCACCTGTTCTCACCTGGGTTCATAAAATATTTCAGGGAACACTTACAAATGAAACAAGATGCTTGCGATGTGAAACTGTAACTGCTAGGGACGAAACATTTTTGGATCTTAGTCTTGACATAGAACAGAACAGTTCCATCACAAGCTGTCTCCGTAACTTTAGTTCAACATACATGCTTAATGCTGATGACAAGTTCTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCACAAAAAAGAATGAAAATTAAGATCCCCCCTCGTATTCTTGTTATTCACTTGAAGCGCTTCAAGTACATTGAACAACTTGGGCGATACAAAAAGCTCTCTTATCGTGTGGTCTTCCCCATGGAGCTGAAGTTATGCAATACAACCGATGACGCACCGGGTTCAGATTCAGAGTATTCACTATTTGCAGTCGTTGTTCATGTTGGCAGTGGTCCAAATCATGGGCACTATATTAGCCTTGTAAAAAGCCATAACCACTGGCTCTTTTT

Fln Alignment:

biogeco1_euler_13720___MGTTGSRLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSRTKTGRETEENLLTCLADLFTQIYSQKKKTGVIAPKRFVQRVKKENENFRSYMHQDAHEFLNFLLNELVDILEKEASA--NQKLSGSLTQPEKKMNGSINGLANG-SQQPPVLTWVHKIFQGTLTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTYMLNADDKFFCDKCCSLQEAQKRMKIKIPPRILVIHLKRFKYIEQLGRYKKLSYRVVFPMELKLCNTTDDAPGSDSEYSLFAVVVHVGSGPNHGHYISLVKSHNHWLF
O24454_______________MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE--PYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain