SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84819

Length: 355 nt

UniGene Fasta

>sp_v2.0_unigene84819
GGCATCCTATTCTTGTTCCTGATTCTGCACGGGTTCAGATGGCGAATGTAAGCCCTGATGTGTTCAAATTCTAGGGTTGGATTCTCTGTTTTATTCCTGTTGTGAGCTGACACTTGATTGCTCTGCAGAAAACTGTGATGTCATTGGATATGTGCTGCGATAAATGCAAGAAGGTCGCCTTGCATTCTGTCACTAAAATCGATGGAATCGATTCGTTGTCGATCGATATGAAGGAGAGGACGCTGACGGTGATCGGAGATGCAGATCCCGTGGGCGTCGCCAATTTGCTAAGAAGGAAGTTTAGGTGCGCTAAATTGATGTCGGCCGGGCCCGTGCCGCCTCCTCCGCCGCCTGA

Ace file of the UniGene sp_v2.0_unigene84819

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein [Arabidopsis thaliana] ref\|NP_001030928.1\| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] emb\|CAA71173.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAL36161.1\| unknown protein	-	-	3.0e-08	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	heavy metal transport detoxification protein	-	-	1.61481e-34	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2F5

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 72 - 175

Fln protein: MSLDMCCDKCKKVALHSVTKIDGIDSLSIDMKERTLTVIGDADPVGVANLLRRKFRCAKLMSAGPVPPPPPP

Protein Length: 73

Fln nts: GGCATCCTATTCTTGTTCCTGATTCTGCACGGGTTCAGATGGCGAATGTAAGCCCTGATGTGTTCAAATTCTAGGGTTGGATTCTCTGTTTTATTCCTGTTGTGAGCTGACACTTGATTGCTCTGCAGAAAACTGTG_-_ATGTCATTGGATATGTGCTGCGATAAATGCAAGAAGGTCGCCTTGCATTCTGTCACTAAAATCGATGGAATCGATTCGTTGTCGATCGATATGAAGGAGAGGACGCTGACGGTGATCGGAGATGCAGATCCCGTGGGCGTCGCCAATTTGCTAAGAAGGAAGTTTAGGTGCGCTAAATTGATGTCGGCCGGGCCCGTGCCGCCTCCTCCGCCGCCTGA

Fln Alignment:

biogeco1_euler_11724___KTVMSLDMCCDKCKKVALHSVTKIDGIDSLSIDMKERTLTVIGDADPVGVANLLRRKFRCAKLMSAG
A9P2F5_______________KTVMSLDLRCDKCKKIALHSITKIEGIDSLSIDMKERTLTVIGDADPVGVANMLRTKFRCAKLLSAG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain