SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84721

Length: 270 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene84721
AAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACATACCTTATTGAGCAGAGTAAAGCTCAATTGGTAGTCGTTGCACATGATGTTGATCCAATTGAGTTGGTAGTGTGGCTTCCTGCACTTTGTAGAAAAATGGGGAAAGCACGTCTTGGATCGATTGTGCACAAAAAAACAGCAACAGCCTTGTGCTTGACTTCTGTGAAGAATGAGGACAAGATGGAATTTAGCAAGATTGTTGAGGCAGTAAAGGCTAACTTCAATGACAAG

Ace file of the UniGene sp_v2.0_unigene84721 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein l7a [Oryza sativa Indica Group]	-	-	8.99999e-40	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	60s ribosomal protein l7a	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal protein L7A/L8	IPR001921	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3		IPR005132	-	-
Sma3	Peptidase C50, separase	IPR005314	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Mo25-like	IPR013878	-	-
Sma3		IPR014734	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADJ2

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 90 - 258

Fln protein: KPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKMGKARLGSIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDK

Protein Length: 91

Fln nts: AAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACATACCTTATTGAGCAGAGTAAAGCTCAATTGGTAGTCGTTGCACATGATGTTGATCCAATTGAGTTGGTAGTGTGGCTTCCTGCACTTTGTAGAAAAATGGGGAAAGCACGTCTTGGATCGATTGTGCACAAAAAAACAGCAACAGCCTTGTGCTTGACTTCTGTGAAGAATGAGGACAAGATGGAATTTAGCAAGATTGTTGAGGCAGTAAAGGCTAACTTCAATGACAAG

Fln Alignment:

biogeco1_euler_9806___KPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKM--------GKARLGSIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDK
D5ADJ2_______________KPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain