SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84640

Length: 1328 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene84640

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein YME1, putative n=1 Tax=Ricinus communis RepID=B9RRQ8_RICCO	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	atp-dependent zinc metalloprotease ftsh mitochondrial-like	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	peptidase activity, acting on L-amino acid peptides	GO:0070011	Molecular Function	92%
Blast2go	ATPase activity	GO:0016887	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017909	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: your sequence is shorter than subject: 322 - 695

Fln protein: LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNVSALKAAMDGAKAVSMADLEYAKDKIMMGSERKSAVISDESRRLTAYHEGGHALVAIHTDGALPVHKATIVPRGMSLGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDIQQATSIARAMVTKYGMSKAVGLVTHNYDDNGKSMSTETRQLIENEVRDFLERAYGNAKAILTTHQKELHALAKALLEHETLSGNQIKALLAQVNSQSKSLSATPQPVGS*

Protein Length: 323

Fln nts: GCTGGATGGTTTCAAGCAAAATGAAGGAATAATAGTTATTGCTGCTACTAATTTCCCTGAGTCATTGGATAAGGCCCTGGTTAGACCTGGTCGCTTTGATCGGCATGTTGTAGTACCCAACCCTGATGTTGAAGGTCGCAGGCAGATCCTAGAATCCCACATGTCAAAGGTCTTAAAGGCAGATGATGTAGATTTGATGATTATTGCGAGAGGAACTCCAGGATTTTCAGGTGCCGATCTTGCAAATTTGGTGAATGTTTCCGCTCTTAAAGCAGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGACCTTGAGTATGCAAAAGACAAGATTATGATGGGAAGTGAACGCAAATCCGCTGTAATATCGGATGAATCCAGACGCTTAACTGCTTATCACGAGGGAGGTCATGCGCTTGTGGCAATTCATACAGATGGTGCTCTTCCTGTACATAAAGCTACAATTGTTCCAAGAGGAATGTCTCTTGGAATGGTTTCACAGCTTCCTGATAAGGACGAGACTAGTATTTCTCGTAAACAGATGCTGGCACGTTTAGACGTCTGTATGGGTGGAAGAGTTGCAGAAGAGCTGATTTTTGGAGAGAGTGAGGTGACATCTGGGGCTTCTTCGGATATCCAGCAGGCGACATCAATTGCCAGAGCTATGGTAACAAAATATGGAATGAGCAAAGCTGTAGGCCTTGTAACACATAACTACGATGACAATGGGAAGAGCATGAGCACAGAGACACGACAACTTATTGAGAACGAAGTAAGAGATTTTCTGGAAAGAGCTTATGGAAATGCAAAAGCCATTTTGACCACACACCAAAAAGAACTACATGCACTAGCAAAGGCACTTCTTGAGCATGAGACACTCAGTGGGAATCAAATTAAAGCTTTGCTTGCACAAGTTAACAGTCAGTCTAAATCTTTGTCAGCAACACCACAACCAGTAGGATCGTAA___TAGACTAGATTTGCTGCAGCTGCAGTAGCCAAAGGTCAGGGTGTGGCACAACCAGTAGGATTGTAATAGACTTGATTCCCCAATTATTCTTGTAATCTATTGTTCTATTTTGGGGGCTGTAAATTTCTGGTAGTGCATGTTATAATGAAAAGGGGACTGCATAAGATGCTTTCTCACCCCTGGAACATGTTTACTAATTAGGAGTATGCATGCCCTGGTTATGCCTTATATGTTGGGAAATTGTAATTTTTGCACCACAGCCCCTACCGTGGAAGTGTCAGCAATATCCTGTCAAAAATGTGATTATGTACTATGTGAATTGATTGCTGCAGGGAACTTTTCAAATGTTTCTCCTAATACC

Fln Alignment:

biogeco1_euler_8262___LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNVSALKAAMDGAKAVSMADLEYAKDKIMMGSERKSAVISD-ESRRLTAYHEGGHALVAIHTDGALPVHKATIVPRGMSLGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDIQQATSIARAMVTKYGMSKAVGLVTHNYDDNG---------KSMSTETRQLIENEVRDFLERAYGNAKAILTTHQXXXXXXXXXXXXXXTLSGNQIKALLA---QVNSQSK-SLSATPQPV
C0PQ75_______________MDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGME--GTIMTDGKNKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPGDDPTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMSEIGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRALLSEFIEIPIQNRVPVAASPVPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain