SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84497

Length: 469 nt

UniGene Fasta

>sp_v2.0_unigene84497
TTTTTGTCTTTGTTCCGCTTCAAGCTCTGGTGGATGACACAGAGGATGGGCTCATATGGTAGAGATGTCCCATTTGAGACTCAATTTTTGCTAGTTGAGGGTAGTGAAGGTTCACCTCTGAGCAATGGTGTGGACGATGGCCTTGGAGAGCCAACAATCTATATTGTTTTCTTGCCACTGTTGGAAGGATCTTTCAGAGCAGTTTTGCAAGGAAATGAAAACAATGAGCTTGAAATGTGTCTGGAAAGCGGAGATCCTACTTGTTGAGACATCTCAAGGAGTTTATTCAGTTTTTGTTGGTGCTGGAACGGATCCCTGTGAAGTGATTATTAGTGCAGTAAAGTGAGAACCCTTTCCATGCTTCAACTTTCATATTTAATTTCCTCTTTTGGAACTTCTTAGATTTCAGTGTCAATGTTATATGATTAGAATCAATTATTGATAACGCAGGGCTGTTGAGAGGCATTCT

Ace file of the UniGene sp_v2.0_unigene84497

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_15.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7UAQ2_VITVI	-	-	1.0e-32	68%
FL-Next	sp=Probable galactinol--sucrose galactosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	alkaline alpha galactosidase i	-	-	1.0053e-34	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	1.0053e-34	79%
Blast2go	mannitol biosynthetic process	GO:0019593	Biological Process	1.0053e-34	79%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	1.0053e-34	79%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.0053e-34	79%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.0053e-34	79%
Blast2go	raffinose family oligosaccharide biosynthetic process	GO:0010325	Biological Process	1.0053e-34	79%
Blast2go	transferase activity	GO:0016740	Molecular Function	1.0053e-34	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.0053e-34	79%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84VX0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 536 aas, your sequence is shorter than subject: 89 - 754

Fln protein: FLSLFRFKLWWMTQRMGSYGRDVPFETQFLLVEGSEGSPLSNGVDDGLGEPTIYIVFLPLLEGSFRAVLQGNENNELEMCLESGDPTC*

Protein Length: 90

Fln nts: TTTTTGTCTTTGTTCCGCTTCAAGCTCTGGTGGATGACACAGAGGATGGGCTCATATGGTAGAGATGTCCCATTTGAGACTCAATTTTTGCTAGTTGAGGGTAGTGAAGGTTCACCTCTGAGCAATGGTGTGGACGATGGCCTTGGAGAGCCAACAATCTATATTGTTTTCTTGCCACTGTTGGAAGGATCTTTCAGAGCAGTTTTGCAAGGAAATGAAAACAATGAGCTTGAAATGTGTCTGGAAAGCGGAGATCCTACTTGTTGAGACATCTCAAGGAGTTTATTCAGTTTTTGTTGGTGCTGGAACGGATCCCTGTGAAGTGATTATTAGTGCAGTAAAGTGAGAACCCTTTCCATGCTTCAACTTTCATATTTAATTTCCTCTTTTGGAACTTCTTAGATTTCAGTGTCAATGTTATATGATTAGAATCAATTATTGATAACGCAGGGCTGTTGAGAGGCATTCT

Fln Alignment:

biogeco1_euler_5622___FLSLFRFKLWWMTQRMGSYGRDVPFETQFLLVEGSEGSPLSNGVDDGLGEPTIYIVFLPLLEGSFRAVLQGNENNELEMCLESGDPT
Q84VX0_______________FMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDLG-----GRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGDPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain