SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84451

Length: 1403 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene84451

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb\|AAL07170.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14126.1\| unknown protein [Arabidopsis thaliana] gb\|AAM65430.1\| unknown [Arabidopsis thaliana] gb\|AEE27652.1\| pre-mRNA-processing factor 39 [Ar	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB58

Fln msg: Distance to subject end: 176 aas, your sequence is shorter than subject: 238 - 268

Fln protein: MYKKAKEFDVKIHDFETAIRRPYFHVKPLDDLQLGNWHRYLDFIEKVNDFDRTVKLYERCLIACANYPEYWIRYVQCMETAGSMEVANDALARATQIFVKRQPEIHIFAARFKEQMGDIPGARAEYEFLCTELAPGLLDAIIKHANMEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV

Protein Length: 239

Fln nts: ACTTGTTAACCACTCTTGAGGATATCATGGGTGCAACAATACATACAATGCTGCCAGGGAAGATCAAAGTTCAAATAAGGGCAAAGAGGGCCTCTGAGCACCACTTCATATCTCGGACATAGTATGGTTTTGTCGGGAAGGTAAATTTAGCATATTTGTGCCTAACTTTGGAAGTGTCAATGATGTTACAGTGAAATTTTTCCTTCTGGTCCAAGATTTCCGTCTGTGGTGGGTTTAATCCGATCTTTAATGGGAAGACGACAGAAACAGAGGAGGAATTGTGTGCAGTTGTAACAATTGGATTGTATCTGTGGCATGTTTTTTCAGGTTATTTGAGCGAGGCCTGTCATATGTTGGAACTGACTACTTGTCCTATCCTCTTTGGGATAAGTACATTGAATTTGAATATTCACAGCAGGAGTGGAGTCGCCTGGCACAGATTTACACTCGAATTTTGCAGATTCCTATCCAACAGTTGGACCGATATTACGGAAGTTTCAAGGAACTGTCTGCCAGTAGACCATTATTAGAGTTGCGAACTGTAGAAGAAAATGCAGCTGCTGCTGCAATAGTTACGGGCCAAGACACAGGTGAAAGGCCCACAGATGGTGATGAAGCACCAAATCCTGAAGTTGCTGTTTCATCTGAAGCTGAAGAATTGGAGAAGTACTTGGCTGTTAGAGAAGCA_-_ATGTATAAGAAAGCAAAAGAATTTGATGTAAAGATCCATGATTTTGAGACAGCTATTCGTAGACCTTATTTTCACGTGAAGCCTCTAGATGACTTGCAACTAGGCAACTGGCATCGGTATCTTGACTTCATTGAGAAAGTGAACGATTTTGATCGGACAGTAAAATTGTATGAAAGATGTCTTATTGCATGTGCAAACTACCCAGAGTATTGGATTCGTTATGTTCAATGTATGGAAACCGCTGGAAGCATGGAAGTTGCAAATGATGCTCTTGCACGGGCTACACAAATTTTTGTGAAGAGACAACCTGAGATCCACATTTTTGCTGCAAGATTCAAAGAACAGATGGGAGACATTCCTGGTGCTCGTGCAGAGTATGAATTTCTTTGCACAGAGCTAGCCCCTGGTCTCCTAGATGCTATAATTAAACATGCCAACATGGAACATCGGCTGGGGACCTCTGAATCAGCAATGTCAATATTTGAAACAGCTATTGCAACTGAGAAAGCAAAAGAACAGTCACAGTCACTGCCTCTGTTATATATTCAGTACTCTCGTTTTCTTCAGCTAGCTGCAGGCAATGCAGAAAGAGCAAGAGAAGTTTTGAATGAAGCACTGGAGCTTCTGCCTTTTTCAAAGACTCTTCTTGAGGTAGCTATACATTTAGAATCAAGAAGTCTTGGTTCTAAACAAATTGAGTACCTAGATTCTGTTG

Fln Alignment:

biogeco1_euler_5084___MEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV
D5AB58_______________MEHRLGSSESAMPIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAVGNADRAREVLIEALELLPFSKTLLEVAIHLESRRLGSKQIDYLDSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain