SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84294

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene84294
ATGATCCCGCGGAAGAAGGGCTGCATAATTTCTACTGCTAGCATTGCAAGTATTGCAGGAGGATTTGCTCCATACTGCTACACAGCCTCCAAGCATGCAGTAATAGGGATGACCAAGAATGGCGCAGCTGAGCTGGGCAAATATGGGATCCGAGTCAACGCTGTGTCTCCTTCTGGATTGGCCACACCTCTGTCAATTCAGTACTTCAAGGAAGGCGATGCCACCTCATCTGTTTCAGAAATGGAGACTCTTAAGCTGGCTGTGGAAGCCTTCTGCAGCAGTATCGCCAACTTAGATGGAACGATTCTTACAGTGGAGGATGTTGCGAAGGCAGGTCTGTATTTGGCGAGTGATGAGGCTAAATATGTTAGCGGCCATAACCTTGTTGTGGATGGCGAAGCACCGTTGTTAATCACTCGTGGACAACCTATCGCTGATACTTTAATGGTATTTGTCAATAAGGTTAGC

Ace file of the UniGene sp_v2.0_unigene84294 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	9.0e-29	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	sex determination protein tasselseed-2	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY0

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 156 - 291

Fln protein: MIPRKKGCIISTASIASIAGGFAPYCYTASKHAVIGMTKNGAAELGKYGIRVNAVSPSGLATPLSIQYFKEGDATSSVSEMETLKLAVEAFCSSIANLDGTILTVEDVAKAGLYLASDEAKYVSGHNLVVDGEAPLLITRGQPIADTLMVFVNKVS

Protein Length: 157

Fln nts: ATGATCCCGCGGAAGAAGGGCTGCATAATTTCTACTGCTAGCATTGCAAGTATTGCAGGAGGATTTGCTCCATACTGCTACACAGCCTCCAAGCATGCAGTAATAGGGATGACCAAGAATGGCGCAGCTGAGCTGGGCAAATATGGGATCCGAGTCAACGCTGTGTCTCCTTCTGGATTGGCCACACCTCTGTCAATTCAGTACTTCAAGGAAGGCGATGCCACCTCATCTGTTTCAGAAATGGAGACTCTTAAGCTGGCTGTGGAAGCCTTCTGCAGCAGTATCGCCAACTTAGATGGAACGATTCTTACAGTGGAGGATGTTGCGAAGGCAGGTCTGTATTTGGCGAGTGATGAGGCTAAATATGTTAGCGGCCATAACCTTGTTGTGGATGGCGAAGCACCGTTGTTAATCACTCGTGGACAACCTATCGCTGATACTTTAATGGTATTTGTCAATAAGGTTAGC

Fln Alignment:

biogeco1_euler_2459___MIPRKKGCXXXXXXXXXXAGGFAPYCYTASKHAVIGMTKNGAAELGKYGIRVNAVSPSGLATPLSIQYFKEGDATSSVSEMETLKLAVEAFCSSIANLDGTILTVEDVAKAGLYLASDEAKYVSGHNLVVDG
B8LRY0_______________MIPQKKGCIISTASVASIVGGLTPYSYTASKHAVIGLTKNGAAELGKYGIRVNAVSPYGLATALTVEYFKEGDASSSASEMD-LKAAVDAFCSSVANLEGTILKVEDVAEAGLYLASDEAKYVSGHNLVVDG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain