SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene84210

Length: 379 nt

UniGene Fasta

>sp_v2.0_unigene84210
GACCTGAACAGTCAAAATGCCTCAGGGAGATTACATAGACTTGCACAGGAAGCGGCATGGGTACCGCTTGGATTATTTTGAGAAGAAGCGCAAGAAGGAGGCTCGTGAAGTGCACAAGCGAGCTGCATTTGCACAAAAGGCTTTGGGTATCAAGGGTAAGATGTGCTTTGATGAAGAAAACGCTGGCTATGCATGAAACAAAGACAAACAGACGAAAGGCAGATGACAATGTCCAGGAGGGAGCAGTACCTGCATACTTGCTAGATCGTGAAGCAACTACTCGTGCCAAGGTGCTGAGCAATACAATCAAGCAAAAAAGGAAGGAGAAAGCTGGTAAATGGGAGGTTCCTCTTCCCAAGGTGAGGCCCATTGCAGAAGA

Ace file of the UniGene sp_v2.0_unigene84210

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TGF-beta inducible protein (Fragment) n=1 Tax=Platanus x acerifolia RepID=Q1M300_PLAAC	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ribosomal protein s8e family protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKU5

Fln msg: STOP codon was not found. Distance to subject end: 62 aas, your sequence is longer than subject: 107 - 46

Fln protein: MGTAWIILRRSARRRLVKCTSELHLHKRLWVSRVRCALMKKTLAMHETKTNRRKADDNVQEGAVPAYLLDREATTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPIAE

Protein Length: 108

Fln nts: GACCTGAACAGTCAAAATGCCTCAGGGAGATTACATAGACTTGCACAGGAAGCGGC_-_ATGGGTACCGCTTGGATTATTTTGAGAAGAAGCGCAAGAAGGAGGCTCGTGAAGTGCACAAGCGAGCTGCATTTGCACAAAAGGCTTTGGGTATCAAGGGTAAGATGTGCTTTGATGAAGAAAACGCTGGCTATGCATGAAACAAAGACAAACAGACGAAAGGCAGATGACAATGTCCAGGAGGGAGCAGTACCTGCATACTTGCTAGATCGTGAAGCAACTACTCGTGCCAAGGTGCTGAGCAATACAATCAAGCAAAAAAGGAAGGAGAAAGCTGGTAAATGGGAGGTTCCTCTTCCCAAGGTGAGGCCCATTGCAGAAGA

Fln Alignment:

biogeco1_euler_1623___MGTAWIILRRSARRRLVKCTSELHLHKRLWVSRVRC
A9NKU5_______________MGTAWIILRRSARRRLVKCTSELHLPKRLWVSRVRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain