UniGene Name: sp_v2.0_unigene84068
Length: 70 nt
Origin of reads:
UniGene Fasta |
---|
>sp_v2.0_unigene84068
A |
Ace file of the UniGene sp_v2.0_unigene84068 |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Full-Lengther Next Prediction |
---|
Fln status: unknown
Fln database: testcode
Fln msg: Sequence length < 200 nt
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
SSRs (tot: 175) |
---|
Start position | End position | Sequence | Length |
---|---|---|---|
44 | 55 | TGC TGC TGC TGC | 12 |
609 | 620 | ATA ATA ATA ATA | 12 |
236 | 247 | TCC TCC TCC TCC | 12 |
715 | 727 | CCT CCT CCT CCT C | 13 |
19 | 33 | GA GA GA GA GA GA GA G | 15 |
232 | 248 | CTG CTG CTG CTG CTG CT | 17 |
17 | 30 | GAA GAA GAA GAA GA | 14 |
2 | 14 | TCT TCT TCT TCT T | 13 |
1 | 79 | AAGCAGTGGGTATCAAACGCAGAGTA AAGCAGTGGGTATCAAACGCAGAGTA AAGCAGTGGGTATCAAACGCAGAGTA A | 79 |
15 | 27 | AGC AGC AGC AGC A | 13 |
53 | 65 | TGC TGC TGC TGC T | 13 |
452 | 463 | GCT GCT GCT GCT | 12 |
300 | 319 | AGGTCG AGGTCG AGGTCG AG | 20 |
21 | 32 | CTG CTG CTG CTG | 12 |
1095 | 1107 | GAAT GAAT GAAT G | 13 |
220 | 232 | TGTT TGTT TGTT T | 13 |
334 | 347 | CCT CCT CCT CCT CC | 14 |
1 | 15 | GAGCA GAGCA GAGCA | 15 |
195 | 206 | TTC TTC TTC TTC | 12 |
340 | 351 | GAT GAT GAT GAT | 12 |
28 | 39 | GAG GAG GAG GAG | 12 |
8 | 19 | TGG TGG TGG TGG | 12 |
385 | 398 | CTAT CTAT CTAT CT | 14 |
107 | 118 | TAA TAA TAA TAA | 12 |
3 | 15 | TGC TGC TGC TGC T | 13 |
1177 | 1193 | CGC CGC CGC CGC CGC CG | 17 |
479 | 493 | CCTTT CCTTT CCTTT | 15 |
84 | 95 | CAT CAT CAT CAT | 12 |
731 | 750 | AGAGGC AGAGGC AGAGGC AG | 20 |
1133 | 1145 | TCA TCA TCA TCA T | 13 |
213 | 236 | TTC TTC TTC TTC TTC TTC TTC TTC | 24 |
545 | 565 | GCCGGA GCCGGA GCCGGA GCC | 21 |
126 | 137 | GTC GTC GTC GTC | 12 |
122 | 135 | GGC GGC GGC GGC GG | 14 |
460 | 477 | AGGCAA AGGCAA AGGCAA | 18 |
657 | 669 | CTG CTG CTG CTG C | 13 |
6 | 17 | CTC CTC CTC CTC | 12 |
571 | 582 | TGA TGA TGA TGA | 12 |
569 | 582 | GCA GCA GCA GCA GC | 14 |
12 | 23 | TGG TGG TGG TGG | 12 |
551 | 563 | CTC CTC CTC CTC C | 13 |
168 | 179 | CAG CAG CAG CAG | 12 |
301 | 319 | TTCT TTCT TTCT TTCT TTC | 19 |
470 | 487 | AAAAT AAAAT AAAAT AAA | 18 |
734 | 746 | GGA GGA GGA GGA G | 13 |
425 | 436 | TCT TCT TCT TCT | 12 |
388 | 401 | AAG AAG AAG AAG AA | 14 |
773 | 784 | GCT GCT GCT GCT | 12 |
178 | 195 | CGTCCA CGTCCA CGTCCA | 18 |
198 | 211 | GAG GAG GAG GAG GA | 14 |
110 | 122 | TACA TACA TACA T | 13 |
1128 | 1140 | TTA TTA TTA TTA T | 13 |
438 | 449 | GTG GTG GTG GTG | 12 |
400 | 411 | ATG ATG ATG ATG | 12 |
471 | 484 | GCT GCT GCT GCT GC | 14 |
987 | 1001 | TGA TGA TGA TGA TGA | 15 |
124 | 135 | GCA GCA GCA GCA | 12 |
471 | 483 | GCC GCC GCC GCC G | 13 |
400 | 411 | ATG ATG ATG ATG | 12 |
1644 | 1655 | AT AT AT AT AT AT | 12 |
263 | 274 | CAT CAT CAT CAT | 12 |
55 | 68 | GCA GCA GCA GCA GC | 14 |
73 | 85 | TGAT TGAT TGAT T | 13 |
416 | 427 | CTC CTC CTC CTC | 12 |
21 | 35 | TAT TAT TAT TAT TAT | 15 |
166 | 179 | CCG CCG CCG CCG CC | 14 |
33 | 49 | AAG AAG AAG AAG AAG AA | 17 |
239 | 250 | TGC TGC TGC TGC | 12 |
353 | 366 | CGT CGT CGT CGT CG | 14 |
558 | 569 | CTG CTG CTG CTG | 12 |
78 | 100 | ATTCCT ATTCCT ATTCCT ATTCC | 23 |
758 | 769 | GGA GGA GGA GGA | 12 |
126 | 137 | GAT GAT GAT GAT | 12 |
32 | 48 | GCA GCA GCA GCA GCA GC | 17 |
126 | 137 | CCA CCA CCA CCA | 12 |
87 | 100 | TTA TTA TTA TTA TT | 14 |
622 | 639 | AATAGC AATAGC AATAGC | 18 |
469 | 480 | TTG TTG TTG TTG | 12 |
232 | 244 | CAT CAT CAT CAT C | 13 |
443 | 468 | ACATCC ACATCC ACATCC ACATCC AC | 26 |
288 | 303 | GTG GTG GTG GTG GTG G | 16 |
15 | 26 | CAG CAG CAG CAG | 12 |
460 | 473 | GAA GAA GAA GAA GA | 14 |
264 | 275 | CCA CCA CCA CCA | 12 |
518 | 538 | TTTAGC TTTAGC TTTAGC TTT | 21 |
377 | 391 | AAG AAG AAG AAG AAG | 15 |
104 | 119 | GGT GGT GGT GGT GGT G | 16 |
974 | 988 | AAAGG AAAGG AAAGG | 15 |
497 | 509 | GTG GTG GTG GTG G | 13 |
201 | 212 | AGG AGG AGG AGG | 12 |
37 | 49 | GAA GAA GAA GAA G | 13 |
14 | 26 | GAA GAA GAA GAA G | 13 |
99 | 112 | GAT GAT GAT GAT GA | 14 |
239 | 251 | ACTC ACTC ACTC A | 13 |
135 | 155 | CTCTGC CTCTGC CTCTGC CTC | 21 |
322 | 340 | GAAGGA GAAGGA GAAGGA G | 19 |
341 | 352 | GGA GGA GGA GGA | 12 |
54 | 68 | AACTG AACTG AACTG | 15 |
21 | 32 | TTG TTG TTG TTG | 12 |
35 | 47 | GAA GAA GAA GAA G | 13 |
149 | 170 | AGTAGCT AGTAGCT AGTAGCT A | 22 |
209 | 221 | ATC ATC ATC ATC A | 13 |
53 | 64 | AGC AGC AGC AGC | 12 |
229 | 240 | TGG TGG TGG TGG | 12 |
276 | 293 | GAATTG GAATTG GAATTG | 18 |
308 | 320 | AGTG AGTG AGTG A | 13 |
184 | 196 | AC AC AC AC AC AC A | 13 |
867 | 884 | ATCAAA ATCAAA ATCAAA | 18 |
64 | 77 | TCC TCC TCC TCC TC | 14 |
452 | 463 | ATG ATG ATG ATG | 12 |
570 | 581 | AT AT AT AT AT AT | 12 |
2 | 14 | CTG CTG CTG CTG C | 13 |
2 | 14 | CTG CTG CTG CTG C | 13 |
15 | 29 | AAAAC AAAAC AAAAC | 15 |
934 | 949 | AT AT AT AT AT AT AT AT | 16 |
14 | 25 | GGA GGA GGA GGA | 12 |
13 | 27 | GAA GAA GAA GAA GAA | 15 |
318 | 337 | CAGATT CAGATT CAGATT CA | 20 |
42 | 58 | AGC AGC AGC AGC AGC AG | 17 |
19 | 41 | ATGGGC ATGGGC ATGGGC ATGGG | 23 |
148 | 170 | ATGGGA ATGGGA ATGGGA ATGGG | 23 |
120 | 133 | ATAC ATAC ATAC AT | 14 |
59 | 78 | AAATAA AAATAA AAATAA AA | 20 |
1320 | 1332 | CAAA CAAA CAAA C | 13 |
181 | 195 | TCTTC TCTTC TCTTC | 15 |
1 | 12 | TA TA TA TA TA TA | 12 |
704 | 716 | AG AG AG AG AG AG A | 13 |
155 | 166 | CTG CTG CTG CTG | 12 |
306 | 317 | AT AT AT AT AT AT | 12 |
128 | 142 | CTG CTG CTG CTG CTG | 15 |
2 | 17 | TATT TATT TATT TATT | 16 |
239 | 250 | CTG CTG CTG CTG | 12 |
151 | 165 | AAAGG AAAGG AAAGG | 15 |
133 | 161 | AT AT AT AT AT AT AT AT AT AT AT AT AT AT A | 29 |
226 | 238 | ATA ATA ATA ATA A | 13 |
9 | 29 | GTGACC GTGACC GTGACC GTG | 21 |
1 | 29 | CCGTGA CCGTGA CCGTGA CCGTGA CCGTG | 29 |
218 | 230 | ATTC ATTC ATTC A | 13 |
313 | 325 | TAAA TAAA TAAA T | 13 |
67 | 78 | AGG AGG AGG AGG | 12 |
228 | 242 | ATG ATG ATG ATG ATG | 15 |
500 | 511 | TAA TAA TAA TAA | 12 |
461 | 473 | CCT CCT CCT CCT C | 13 |
805 | 816 | TCT TCT TCT TCT | 12 |
95 | 107 | CTT CTT CTT CTT C | 13 |
38 | 49 | CA CA CA CA CA CA | 12 |
70 | 82 | CTT CTT CTT CTT C | 13 |
285 | 300 | TTTC TTTC TTTC TTTC | 16 |
14 | 26 | ATTT ATTT ATTT A | 13 |
759 | 772 | ATC ATC ATC ATC AT | 14 |
3 | 30 | AC AC AC AC AC AC AC AC AC AC AC AC AC AC | 28 |
3 | 29 | AC AC AC AC AC AC AC AC AC AC AC AC AC A | 27 |
82 | 100 | CGG CGG CGG CGG CGG CGG C | 19 |
224 | 235 | CTT CTT CTT CTT | 12 |
225 | 241 | GGC GGC GGC GGC GGC GG | 17 |
196 | 221 | CAGATC CAGATC CAGATC CAGATC CA | 26 |
4 | 16 | ATA ATA ATA ATA A | 13 |
173 | 192 | GCAGCC GCAGCC GCAGCC GC | 20 |
476 | 488 | AAG AAG AAG AAG A | 13 |
202 | 218 | TCC TCC TCC TCC TCC TC | 17 |
256 | 267 | GAG GAG GAG GAG | 12 |
224 | 246 | GGCGGA GGCGGA GGCGGA GGCGG | 23 |
2 | 30 | AC AC AC AC AC AC AC AC AC AC AC AC AC AC A | 29 |
337 | 362 | GA GA GA GA GA GA GA GA GA GA GA GA GA | 26 |
932 | 950 | CCTCTG CCTCTG CCTCTG C | 19 |
276 | 289 | TCC TCC TCC TCC TC | 14 |
805 | 817 | TTTG TTTG TTTG T | 13 |
26 | 48 | AGGTTGC AGGTTGC AGGTTGC AG | 23 |
897 | 908 | ATC ATC ATC ATC | 12 |
925 | 941 | TCA TCA TCA TCA TCA TC | 17 |
135 | 146 | CAG CAG CAG CAG | 12 |
245 | 256 | AGG AGG AGG AGG | 12 |
295 | 309 | GAG GAG GAG GAG GAG | 15 |
702 | 714 | TAAA TAAA TAAA T | 13 |
655 | 669 | ACAAT ACAAT ACAAT | 15 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain