SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83924

Length: 889 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene83924

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative polyubiquitin [Arabidopsis lyrata]	-	-	100%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	100%
Blast2go	ubiquitin-like protein	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	0.0	99%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 82 aas, your sequence is shorter than subject: 188 - 229

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC*

Protein Length: 189

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTTACAGTACTGGCTGATTTTCTGAACGCGATCGCTGTGCTCTGTTCTGTTTTATTTCCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACACTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTCGTCCTCCGTCTTAGAGGTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAGGAGTCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGGGTGTTGAAATTCTCAACAGTCTTGCGTCTGCGTGGTGGGTGTTGAAATTCTCAACATCTATTTTCATGAATAGGGTCAAAATGCGCATTTCATTGAATTCTTAACTTAGCTAGCAGTTAGATGCCGCAATGCCGCGGCAGCGTCTATATAGGTTTTAGATGTCATGTATTATGAAGACGACTACTTTCAATAAAATAAAAGACTTTAAAGTTT

Fln Alignment:

AllPineV4_rep_c145727___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
289	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain