SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83794

Length: 555 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene83794
CGTCGTGACCTTGGCTGTCACTCAAACGTCGTGACCTTGGCTGTCAGTCAAATTTTCAGCTCGCCACCGAGAAAAGCCGAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCCATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGATGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGTTCTGATACATAAGCAGTGACAGATATGGTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCTAACG

Ace file of the UniGene sp_v2.0_unigene83794

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	89%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	proteasome subunit beta type	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	87%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	87%
Blast2go	proteasome core complex	GO:0005839	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 108 - 273

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCVLIHKQ*QIWCCGAGTAADTEAVTDMVSSQLELHRYAN

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACGTCGTGACCTTGGCTGTCAGTCAAATTTTCAGCTCGCCACCGAGAAAAGCCGAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGATGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGTTCTGATACATAAGCAGTGACAGATATGGTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCTAACG

Fln Alignment:

AllPineV4_rep_c145303___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCVLIH-KQ*QIWCCGAGTAADTEAVTDMVSSQLELHRYA
A9NYV8_______________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
33	40		60		1.0
35	40	60			1.0
36		60	40		1.0
37			40	60	1.0
39			50	50	1.0
43		50	50		1.0
46	50			50	1.0
47		40	60		1.0
48	50			50	1.0
49	50	50			1.0
50	60	40			1.0
256	10	90			0.90298
442		20		80	0.995505
445	33			66	0.997453
446	33		33	33	0.997751
447	33	66			0.997453
448	33		33	33	0.99775
449	33	33	33		0.99775

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain