SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83695

Length: 645 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene83695 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL	-	-	53%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	63%
Blast2go	retrotransposon ty1-copia subclass	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3	Copine	IPR010734	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Transcription factor, fork head, conserved site	IPR018122	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
342			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain