SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83571

Length: 423 nt

UniGene Fasta

>sp_v2.0_unigene83571
GCGATCCACCCTCCATCACGTCATATTTAGGAGAAAATTCTAAGGTTCAAGCACTAGAAGATCACATCGAGCATCAACAACAAATTCTCCAACTCTTAAAGGATAACCTCACATTGGCGTAGAATAGAATGAAACAACAGGCTTATCAACATCGTAGTGAAAGAAGTTTTGATGTAGGTGATTGGGTATTCCTACGGCTACAACTATATAAGCAAATGTCCCTCAAGCAAGCTAAGAAGGATAATAAATTATCACAAAGTATTATGGTCCATACAAAGTGTTGCAAAAGATTGGTACTATGGCATACAAATTGGAGCTTCCTGCAACTTCTTGATTGCACCCAGTTTTCCATGTTTCATGTTTAAAGAAGGTTATAGGCGAGCTCCCAGTTCAAACAATATTGCCAAAATTTGACGAGGAAGG

Ace file of the UniGene sp_v2.0_unigene83571

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=5 Tax=Oryza sativa RepID=Q2QQD0_ORYSJ	-	-	9.0e-20	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	39%
Blast2go	retrotransposon unclassified	-	-	7.93108e-20	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	7.93108e-20	75%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BEK1

Fln msg: Separated hits, possible frame ERROR between 254 and 257, Distance to subject end: 57 aas, your sequence is shorter than subject: 140 - 1469

Fln protein: DPPSITSYLGENSKVQALEDHIEHQQQILQLLKDNLTLA*NRMKQQAYQHRSERSFDVGDWVFLRLQLYKQMSLKQAKKDNKLxxKYYGPYKVLQKIGTMAYKLELPATS*LHPVFHVSCLKKVIGELPVQTILPKFDEE

Protein Length: 141

Fln nts: GCGATCCACCCTCCATCACGTCATATTTAGGAGAAAATTCTAAGGTTCAAGCACTAGAAGATCACATCGAGCATCAACAACAAATTCTCCAACTCTTAAAGGATAACCTCACATTGGCGTAGAATAGAATGAAACAACAGGCTTATCAACATCGTAGTGAAAGAAGTTTTGATGTAGGTGATTGGGTATTCCTACGGCTACAACTATATAAGCAAATGTCCCTCAAGCAAGCTAAGAAGGATAATAAATTATCxxxAAAGTATTATGGTCCATACAAAGTGTTGCAAAAGATTGGTACTATGGCATACAAATTGGAGCTTCCTGCAACTTCTTGATTGCACCCAGTTTTCCATGTTTCATGTTTAAAGAAGGTTATAGGCGAGCTCCCAGTTCAAACAATATTGCCAAAATTTGACGAGGAAGG

Fln Alignment:

AllPineV4_rep_c144605___PPSITSYLGENSKVQALEDHIEHXXXXXXXXKDNLTLA*NRMKQQAYQHRSERSFDVGDWVFLRLQLYKQMSLKQAKKDNKLSxKYYGPYKVLQKIGTMAYKLELPATS*LHPVFHVSCLKKVIGEL-PVQTILPKFDEE
A5BEK1_______________PPKLIPYTPGTTQLQEVENTLKTRDEIIRILRTNLQLAQDRMKKFADIKXTARSFNIGDLVYLRLQPYKQQSVVQ-RRNLKLSxRFYGPYRVLEKIGTVAYRLELPPEAKIHPVFHVSCLKEKLGERHQLVVTLPPXDKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain