SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83568

Length: 448 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene83568
CTACATGGAAACCCAAAGATTATTGTAAGTGACAGAGATCCATTTTCACTGGAAATTTTTGAACAGAATTATTTTCTTGTCTTGGTACTCAATTAGCTCATAGTTCATCTTATCATCCTCAATCTAATGGGAAAACTGAAATAGTAAACAAATGTCTGGAAGGATATCTTCGTTGCTTTGTATATGATAAACAAACACAATGGGTCAAATGGTTACCTCTAGCTGAATGGTGGTATAACACTTCCTTCCATACAGCAACAAAAATGACCCCATTTATGGCACTTTATGGAGATCAACCACCATCCATCACATCATCTTTAAGAGAAAATTCTAAGGTTCAAGTAGTGGAAGACCACATCAATCATCAACAACAAGTTGTCCAACTCTTAAAGGATAACCTCACCCTGGCACAGAATCGAATAGAAAAACATGAAGATCGACATTACAG

Ace file of the UniGene sp_v2.0_unigene83568 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]	-	-	2.0e-30	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%
Blast2go	pol protein integrase region	-	-	5.04168e-38	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BEK1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 146 aas, your sequence is shorter than subject: 148 - 1469

Fln protein: TWKPKDYCK*QRSIFTGNF*TELFSCLGTQLAHSSSYHPQSNGKTEIVNKCLEGYLRCFVYDKQTQWVKWLPLAEWWYNTSFHTATKMTPFMALYGDQPPSITSSLRENSKVQVVEDHINHQQQVVQLLKDNLTLAQNRIEKHEDRHY

Protein Length: 149

Fln nts: CTACATGGAAACCCAAAGATTATTGTAAGTGACAGAGATCCATTTTCACTGGAAATTTTTGAACAGAATTATTTTCTTGTCTTGGTACTCAATTAGCTCATAGTTCATCTTATCATCCTCAATCTAATGGGAAAACTGAAATAGTAAACAAATGTCTGGAAGGATATCTTCGTTGCTTTGTATATGATAAACAAACACAATGGGTCAAATGGTTACCTCTAGCTGAATGGTGGTATAACACTTCCTTCCATACAGCAACAAAAATGACCCCATTTATGGCACTTTATGGAGATCAACCACCATCCATCACATCATCTTTAAGAGAAAATTCTAAGGTTCAAGTAGTGGAAGACCACATCAATCATCAACAACAAGTTGTCCAACTCTTAAAGGATAACCTCACCCTGGCACAGAATCGAATAGAAAAACATGAAGATCGACATTACAG

Fln Alignment:

AllPineV4_rep_c144598___FTGNF*TELFSCLGTQLAHSSSYHPQSNGKTEIVNKCLEGYLRCFVYDKQTQWVKWLPLAEWWYNTSFHTATKMTPFMALYGDQPPSITSSLRENSKVQVVEDHINHQQQVVQLLKDNLTLAQNRIEKHED
A5BEK1_______________FTSTFWKELFKLQGTTLKFSSAYHPQTDGQTEIVNKMVEQYLRCFSGDKPKGWVKWLPLAEWWYNTNIHASTKLSPFESVYGYPPPKLIPYTPGTTQLQEVENTLKTRDEIIRILRTNLQLAQDRMKKFAD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain