SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83535

Length: 670 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene83535

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pol protein (Fragment) n=2 Tax=Picea abies RepID=Q9M6P0_PICAB	-	-	2.0e-31	80%
FL-Next	tr=Putative polyprotein; Zea mays (Maize).	-	-	0.0	48%
Blast2go	pol protein	-	-	2.86157e-31	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
214	33	66			0.997452
215			33	66	0.997453
282		33		66	0.997454
284	33		66		0.997452
289			33	33	0.997752

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain