SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83518

Length: 988 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene83518

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromo domain containing protein	-	-	2.0e-08	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	41%
Blast2go	retroelement pol polyprotein	-	-	1.1586e-36	61%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
110	66		33		0.997467
160	33		66		0.997455
185		33	66		0.997461
201	33		66		0.997454
209		33		66	0.997476
210		33		66	0.997476
282	66			33	0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
718	730	TAT TAT TAT TAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain