SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83416

Length: 609 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene83416 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAL38840.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33400.1\| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-20	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	9.19457e-25	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	9.19457e-25	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	9.19457e-25	88%

Source	InterPros	Term	Type	Identity
Sma3	LDLR class B repeat	IPR000033	-	-
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	NHL repeat	IPR001258	-	-
Sma3	Haloacid dehalogenase/epoxide hydrolase	IPR005833	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3		IPR012335	-	-
Sma3	NHL repeat, subgroup	IPR013017	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
187		83		16	0.994512
190		83		16	0.994512
199		83		16	0.994512
226	80		20		0.995493
236	80		20		0.995493
238		80		20	0.995493
239			20	80	0.995493
242		80		20	0.995493
243		80	20		0.995493
245		20	80		0.995493
247			20	80	0.995493
248		20	80		0.995493
249		20	80		0.995493
250	20			80	0.995493
252			20	80	0.995493
253			20	80	0.995493
258	80		20		0.995493
259	20			80	0.995493
273		33		66	0.997453
295			66	33	0.997452
302	66		33		0.997452
320			33	66	0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain