SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83301

Length: 1056 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene83301 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	95%
FL-Next	sp=Probable calcium-binding protein CML25; Arabidopsis thaliana (Mouse-ear cress).	-	-	30%
Blast2go	polcalcin	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1055	83		16	0.994512
1060	25	75		0.996473
1061		66	33	0.997453

SSRs (tot: 1)

Start position	End position	Sequence	Length
897	912	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain