SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83104

Length: 516 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene83104
ATGCAGAAAGCTTGATCCCTCACTGTCGCATTGCACCTTCTGCATATATACCATCGAGAATGAACATCAGTAATCCATATCCCCTAGTCGTCGCTTTACATCCATCCGAACCGAATCAATTCATTCTTGGAATGACAGATGGAGGAGTTCATGTTATTGAGCCTTCAGAGTAAGAAGGGAAATGGGGTGTTGGACCCCAGATAATGGAACTGGCGGATCAAATCCAACACCAAGTAACCAAGGTTCGGAACCACCGTCAAGGTAGTTCAATGGGAACATAAGAACAAGTCTCTACCGACTCTTTATTTACAAGAATACCATGAATAATGGGCGTATTTTGAGTGAAATGCTTCACTGTGTTCCAGTTTTCGAGGCATTCCTACCAAGATTGTAATTTTCATCAGATATTATTTAGTACTATAGATGGAGATTAATAAACTGTAAATCCTACCTAAATGAGTATCTAGGTGCAATCCTGGTCACTATATCTTGCTAGGTCGTGTAAAGGTCGTGTAA

Ace file of the UniGene sp_v2.0_unigene83104 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein TOPLESS [Arabidopsis thaliana] ref\|NP_849672.1\| protein TOPLESS [Arabidopsis thaliana] ref\|NP_001031050.1\| protein TOPLESS [Arabidopsis thaliana] ref\|NP_001031051.1\| protein TOPLESS [Arabidopsis thaliana] sp\|Q94AI7.1\|TPL_ARATH RecName: Full=Protei	-	-	5.0e-16	60%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	protein topless	-	-	1.83579e-20	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	1.83579e-20	75%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	1.83579e-20	75%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	1.83579e-20	75%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.83579e-20	75%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	1.83579e-20	75%
Blast2go	nucleus	GO:0005634	Cellular Component	1.83579e-20	75%
Blast2go	cytosol	GO:0005829	Cellular Component	1.83579e-20	75%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 35 aas, putative chimeric sequence, your sequence is shorter than subject: 57 - 1131

Fln protein: AESLIPHCRIAPSAYIPSRMNISNPYPLVVALHPSEPNQFILGMTDGGVHVIEPSE*

Protein Length: 58

Fln nts: ATGCAGAAAGCTTGATCCCTCACTGTCGCATTGCACCTTCTGCATATATACCATCGAGAATGAACATCAGTAATCCATATCCCCTAGTCGTCGCTTTACATCCATCCGAACCGAATCAATTCATTCTTGGAATGACAGATGGAGGAGTTCATGTTATTGAGCCTTCAGAGTAA___GAAGGGAAATGGGGTGTTGGACCCCAGATAATGGAACTGGCGGATCAAATCCAACACCAAGTAACCAAGGTTCGGAACCACCGTCAAGGTAGTTCAATGGGAACATAAGAACAAGTCTCTACCGACTCTTTATTTACAAGAATACCATGAATAATGGGCGTATTTTGAGTGAAATGCTTCACTGTGTTCCAGTTTTCGAGGCATTCCTACCAAGATTGTAATTTTCATCAGATATTATTTAGTACTATAGATGGAGATTAATAAACTGTAAATCCTACCTAAATGAGTATCTAGGTGCAATCCTGGTCACTATATCTTGCTAGGTCGTGTAAAGGTCGTGTAA

Fln Alignment:

AllPineV4_rep_c143226___CRIAPSAYIPSRMNISNPYPLVVALHPSEPNQFILGMTDGGVHVIEPSE*EGKWGVGP
Q94AI7_______________CRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
163		33	66		0.997461
164		33		66	0.997461
165		33	66		0.997461
167	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain