SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83091

Length: 567 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene83091
AATGTCACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATTTATGACATTTGTCGCCGTTCCCTGGACATCGAGCGTCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTGACTGCCTCTCTGCGTTTTGATGGTGCTCTGAACGTTGATGTGACTGAGTTCCAAACAAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCAGTAGCTGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGCTCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGACGAGGATGAGGGCGAAGAGTACTGATCGATTATTAATTGCTATACTAAATGCTTGCTGCTAGTATACATTTATATGTTGTTTGGTATTTGGGA

Ace file of the UniGene sp_v2.0_unigene83091

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-tubulin [Eucalyptus grandis]	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	alpha tubulin	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: your sequence is shorter than subject: 166 - 319

Fln protein: MSHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDEDEGEEY*

Protein Length: 167

Fln nts: AATGTCACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATTTATGACATTTGTCGCCGTTCCCTGGACATCGAGCGTCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTGACTGCCTCTCTGCGTTTTGATGGTGCTCTGAACGTTGATGTGACTGAGTTCCAAACAAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCAGTAGCTGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGCTCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGACGAGGATGAGGGCGAAGAGTACTGA___TCGATTATTAATTGCTATACTAAATGCTTGCTGCTAGTATACATTTATATGTTGTTTGGTATTTGGGA

Fln Alignment:

AllPineV4_rep_c143197___SHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEV
C0PRI6_______________THSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain