SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83042

Length: 393 nt

Origin of reads: Inia v1 Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene83042
ATGGGCGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTCATTGGTGTGGGCAGGGTATGGAAGAGGGCAGTTTTCAAGCGCGTGAGGATCTTGCTGCCCTGAGAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGA

Ace file of the UniGene sp_v2.0_unigene83042

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha subunit n=11 Tax=Eukaryota RepID=B1NHW5_9EUKA	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	alpha tubulin	-	-	99%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 119 - 139

Fln protein: MGGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVIGVGRVWKRAVFKRVRILLP*

Protein Length: 120

Fln nts: _-_ATGGGCGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTCATTGGTGTGGGCAGGGTATGGAAGAGGGCAGTTTTCAAGCGCGTGAGGATCTTGCTGCCCTGA___GAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGA

Fln Alignment:

AllPineV4_rep_c143077___MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFV
C0PSC4_______________MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNLTSVAEVFSRIDHKFDLMYAKRAFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain